Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689075..2689276 | Replicon | chromosome |
| Accession | NZ_AP025764 | ||
| Organism | Enterobacter hormaechei strain FUJ80001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689080..2689183 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689075..2689276 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK23_RS12830 (FJMB80001_25100) | 2685343..2686785 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK23_RS12835 (FJMB80001_25110) | 2686890..2687129 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK23_RS12840 (FJMB80001_25120) | 2687164..2687808 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK23_RS12845 (FJMB80001_25130) | 2687976..2688956 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK23_RS12850 (FJMB80001_25140) | 2689002..2689199 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2689075..2689276 | + | 202 | - | - | Antitoxin |
| - | 2689080..2689183 | - | 104 | - | - | Toxin |
| NGK23_RS12855 (FJMB80001_25150) | 2689325..2689663 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK23_RS12860 (FJMB80001_25160) | 2689680..2690549 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK23_RS12865 (FJMB80001_25170) | 2690551..2690922 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK23_RS12870 (FJMB80001_25180) | 2691060..2691290 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK23_RS12875 (FJMB80001_25190) | 2691402..2692040 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK23_RS12880 (FJMB80001_25200) | 2692065..2692727 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40875 NZ_AP025764:c2689183-2689080 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT40875 NZ_AP025764:2689075-2689276 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
