Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2266989..2267255 | Replicon | chromosome |
| Accession | NZ_AP025754 | ||
| Organism | Escherichia sp. KS167_9B strain KS-P079 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2267025..2267128 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2266989..2267255 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE34_RS11395 | 2264144..2265583 | + | 1440 | WP_103253662.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUE34_RS11400 | 2265701..2265937 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUE34_RS11405 | 2266042..2266233 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUE34_RS11410 | 2266234..2266890 | - | 657 | WP_000812737.1 | protein-serine/threonine phosphatase | - |
| - | 2266989..2267255 | + | 267 | - | - | Antitoxin |
| - | 2267025..2267128 | - | 104 | - | - | Toxin |
| QUE34_RS11415 | 2267285..2267626 | - | 342 | WP_000976467.1 | YebY family protein | - |
| QUE34_RS11420 | 2267639..2268511 | - | 873 | WP_039020725.1 | copper homeostasis membrane protein CopD | - |
| QUE34_RS11425 | 2268515..2268889 | - | 375 | WP_000204701.1 | CopC domain-containing protein YobA | - |
| QUE34_RS11430 | 2269028..2269258 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE34_RS11435 | 2269360..2270016 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE34_RS11440 | 2270040..2270702 | + | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40842 NZ_AP025754:c2267128-2267025 [Escherichia sp. KS167_9B]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 267 bp
>AT40842 NZ_AP025754:2266989-2267255 [Escherichia sp. KS167_9B]
AGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATG
GCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGAC
GCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTGTT
CTGGTGAAAGAACTGAGGCGGTTTTTT
AGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATG
GCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGAC
GCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTGTT
CTGGTGAAAGAACTGAGGCGGTTTTTT
