Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2282300..2282568 | Replicon | chromosome |
| Accession | NZ_AP025751 | ||
| Organism | Escherichia sp. HH154_1D strain HH-P049 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2282338..2282441 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2282300..2282568 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE53_RS11285 | 2279457..2280896 | + | 1440 | WP_000057031.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QUE53_RS11290 | 2281014..2281250 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QUE53_RS11295 | 2281355..2281546 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QUE53_RS11300 | 2281547..2282203 | - | 657 | WP_000812715.1 | protein-serine/threonine phosphatase | - |
| - | 2282300..2282568 | + | 269 | - | - | Antitoxin |
| - | 2282338..2282441 | - | 104 | - | - | Toxin |
| QUE53_RS11305 | 2282598..2282939 | - | 342 | WP_000976467.1 | YebY family protein | - |
| QUE53_RS11310 | 2282952..2283824 | - | 873 | WP_000879325.1 | copper homeostasis membrane protein CopD | - |
| QUE53_RS11315 | 2283828..2284202 | - | 375 | WP_000204695.1 | CopC domain-containing protein YobA | - |
| QUE53_RS11320 | 2284341..2284571 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE53_RS11325 | 2284673..2285329 | + | 657 | WP_000011674.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE53_RS11330 | 2285353..2286015 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40795 NZ_AP025751:c2282441-2282338 [Escherichia sp. HH154_1D]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT40795 NZ_AP025751:2282300-2282568 [Escherichia sp. HH154_1D]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCTG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
