Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 5935836..5936530 Replicon chromosome
Accession NZ_AP025730
Organism Sphaerotilus sp. FB-5

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag NGK70_RS25755 Protein ID WP_251971273.1
Coordinates 5936102..5936530 (+) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag NGK70_RS25750 Protein ID WP_251971272.1
Coordinates 5935836..5936102 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-126)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 15753.10 Da        Isoelectric Point: 7.5956

>T40684 WP_251971273.1 NZ_AP025730:5936102-5936530 [Sphaerotilus sp. FB-5]
MRALLDVNVLIAVHDADHIHHTRALAWLATEVRHGWASCPLTQNGCLRIMSQPGYVNPAPLAQVTAMLQRSTATRHHAFW
PDDLSVLDAQSFDHAQVHGHRQLTDLYLLGLAVRHGGRLVTFDQRIPLSAVRGACPEHLVVL

Download         Length: 429 bp

>T40684 NZ_AP025730:5936102-5936530 [Sphaerotilus sp. FB-5]
ATGCGAGCCCTGCTCGACGTGAATGTACTCATCGCCGTTCACGATGCGGACCACATTCACCACACCCGCGCACTGGCCTG
GCTGGCCACCGAAGTCCGCCACGGCTGGGCCAGTTGCCCACTGACGCAAAACGGTTGCCTGCGCATCATGAGTCAGCCGG
GATACGTCAACCCGGCTCCGTTGGCGCAGGTCACGGCCATGCTGCAGCGCTCGACCGCCACGCGGCACCACGCCTTCTGG
CCGGACGATCTGAGCGTGCTGGATGCGCAGTCCTTCGACCATGCCCAGGTGCACGGCCACCGCCAACTGACCGATCTCTA
CTTGCTCGGCTTGGCCGTGCGGCACGGCGGGCGCCTCGTCACCTTCGACCAGCGCATACCGCTGTCGGCCGTGCGCGGGG
CCTGCCCGGAACACCTCGTCGTGCTGTAG

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9369.67 Da        Isoelectric Point: 4.5408

>AT40684 WP_251971272.1 NZ_AP025730:5935836-5936102 [Sphaerotilus sp. FB-5]
MRTTLDIADDVLYAARELSRRQKKSLGQVISELARQAFAGQAARQSGAAVLAEPAGDYLAVLGIEPLPPRGGVVSPDLIE
RLLDDEAP

Download         Length: 267 bp

>AT40684 NZ_AP025730:5935836-5936102 [Sphaerotilus sp. FB-5]
ATGCGAACCACCCTCGACATCGCCGACGACGTGCTCTACGCAGCGCGCGAGTTGTCGCGCCGCCAGAAGAAGTCGTTGGG
GCAAGTCATTTCCGAATTGGCGCGTCAGGCCTTCGCCGGACAGGCTGCCCGGCAGTCTGGTGCTGCTGTGCTCGCGGAAC
CGGCGGGCGACTACCTTGCGGTCCTGGGCATAGAGCCCTTGCCGCCGCGCGGGGGCGTGGTCAGCCCGGATCTGATCGAG
CGCCTGCTGGACGACGAGGCGCCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References