Detailed information of TA system TA040679

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-StbC
• Location: 3178739..3179418
• Replicon: chromosome
• Accession: NZ_AP025730
• Organism: Sphaerotilus sp. FB-5

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: -
• Locus tag: NGK70_RS13770
• Protein ID: WP_251969104.1
• Coordinates: 3178739..3179161 (-)
• Length: 141 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: NGK70_RS13775
• Protein ID: WP_251969105.1
• Coordinates: 3179158..3179418 (-)
• Length: 87 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-123)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 141 a.a.
• Molecular weight: 14786.03 Da
• Isoelectric Point: 5.1170

>T40679 WP_251969104.1 NZ_AP025730:c3179161-3178739 [Sphaerotilus sp. FB-5]
MIVLDTNVLSEAMKPQPDPAVLAWLDAQAADTLYLTSVTLAELWFGIGAMPAGRRREALARTLEGLLPLFEGRILPFDTE
AARHYAQLAVAARAAGRGLPTPDGYIAAMAAARGFAVATRDAAPFKAAGQEVINPWAASP

Nucleotide

• Length: 423 bp

>T40679 NZ_AP025730:c3179161-3178739 [Sphaerotilus sp. FB-5]
ATGATCGTCCTGGACACCAACGTACTCTCCGAGGCCATGAAGCCGCAGCCCGACCCAGCCGTGCTGGCCTGGCTGGACGC
GCAGGCGGCCGACACCTTGTACCTCACCAGCGTCACCCTGGCCGAACTGTGGTTTGGCATCGGCGCCATGCCGGCGGGCC
GGCGCAGGGAGGCCCTGGCGCGAACGCTGGAGGGACTGCTGCCGCTGTTCGAGGGGCGCATCCTGCCCTTCGACACCGAG
GCGGCACGCCACTACGCGCAGCTGGCGGTGGCCGCCCGTGCTGCCGGGCGCGGCCTGCCCACGCCGGACGGCTACATCGC
CGCCATGGCCGCTGCACGCGGCTTTGCCGTGGCCACCCGCGATGCGGCTCCGTTCAAGGCGGCGGGACAGGAAGTCATCA
ACCCCTGGGCCGCTTCACCCTGA

Antitoxin

Protein

• Length: 87 a.a.
• Molecular weight: 9482.90 Da
• Isoelectric Point: 7.2062

>AT40679 WP_251969105.1 NZ_AP025730:c3179418-3179158 [Sphaerotilus sp. FB-5]
MPTLTVRNLPDEVHRALRLRAAQHGRSTEAEVRDILDATVRPPQRLRLGAAMAEVSRRAGLLNEDVLALEALTAERQAPA
QPLVLE

Nucleotide

• Length: 261 bp

>AT40679 NZ_AP025730:c3179418-3179158 [Sphaerotilus sp. FB-5]
ATGCCCACCCTCACCGTCCGCAACCTGCCCGATGAAGTGCACCGCGCACTGCGATTGCGGGCAGCGCAGCATGGCCGCAG
CACGGAGGCGGAGGTCCGCGACATCCTGGATGCCACCGTGCGCCCACCGCAGCGCCTGCGCCTGGGTGCCGCGATGGCAG
AGGTGAGCCGGCGCGCCGGCCTGCTCAATGAGGATGTGCTCGCGCTGGAAGCGCTGACGGCCGAACGCCAGGCACCCGCC
CAACCGCTGGTGCTGGAATGA