Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2186921..2187189 | Replicon | chromosome |
| Accession | NZ_AP025682 | ||
| Organism | Escherichia coli strain Rb-50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2187049..2187151 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2186921..2187189 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EcoliRb_RS10430 | 2183474..2184136 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EcoliRb_RS10435 | 2184160..2184816 | - | 657 | WP_137501444.1 | carbon-nitrogen hydrolase family protein YobB | - |
| EcoliRb_RS10440 | 2184918..2185148 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EcoliRb_RS10445 | 2185287..2185661 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| EcoliRb_RS10450 | 2185665..2186537 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| EcoliRb_RS10455 | 2186550..2186891 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2186921..2187189 | - | 269 | - | - | Antitoxin |
| - | 2187049..2187151 | + | 103 | - | - | Toxin |
| EcoliRb_RS10460 | 2187286..2187942 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| EcoliRb_RS10465 | 2187943..2188134 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EcoliRb_RS10470 | 2188239..2188475 | - | 237 | WP_001295499.1 | YebV family protein | - |
| EcoliRb_RS10475 | 2188593..2190032 | - | 1440 | WP_137501658.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T40610 NZ_AP025682:2187049-2187151 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT40610 NZ_AP025682:c2187189-2186921 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
