Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2871504..2871772 | Replicon | chromosome |
| Accession | NZ_AP025677 | ||
| Organism | Escherichia coli strain Rb-23 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2871542..2871644 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2871504..2871772 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM20_RS14165 | 2868661..2870100 | + | 1440 | WP_001385382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MWM20_RS14170 | 2870218..2870454 | + | 237 | WP_001295499.1 | YebV family protein | - |
| MWM20_RS14175 | 2870559..2870750 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MWM20_RS14180 | 2870751..2871407 | - | 657 | WP_000812727.1 | protein-serine/threonine phosphatase | - |
| - | 2871504..2871772 | + | 269 | - | - | Antitoxin |
| - | 2871542..2871644 | - | 103 | - | - | Toxin |
| MWM20_RS14185 | 2871802..2872143 | - | 342 | WP_000976475.1 | YebY family protein | - |
| MWM20_RS14190 | 2872156..2873028 | - | 873 | WP_000879318.1 | copper homeostasis membrane protein CopD | - |
| MWM20_RS14195 | 2873032..2873406 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| MWM20_RS14200 | 2873545..2873775 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MWM20_RS14205 | 2873877..2874533 | + | 657 | WP_244345433.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MWM20_RS14210 | 2874557..2875219 | + | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T40591 NZ_AP025677:c2871644-2871542 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT40591 NZ_AP025677:2871504-2871772 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
