Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1947794..1948625 | Replicon | chromosome |
| Accession | NZ_AP025675 | ||
| Organism | Escherichia coli strain Rb-3 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | S1P968 |
| Locus tag | MWM15_RS09125 | Protein ID | WP_000854814.1 |
| Coordinates | 1947794..1948168 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | - |
| Locus tag | MWM15_RS09130 | Protein ID | WP_024174331.1 |
| Coordinates | 1948257..1948625 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM15_RS09085 (1943190) | 1943190..1944356 | + | 1167 | WP_244337980.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
| MWM15_RS09090 (1944475) | 1944475..1944948 | + | 474 | WP_001105376.1 | DNA gyrase inhibitor SbmC | - |
| MWM15_RS09095 (1945146) | 1945146..1946204 | + | 1059 | WP_001200890.1 | FUSC family protein | - |
| MWM15_RS09100 (1946376) | 1946376..1946705 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| MWM15_RS09105 (1946806) | 1946806..1947129 | - | 324 | WP_223216378.1 | EutP/PduV family microcompartment system protein | - |
| MWM15_RS09110 (1947108) | 1947108..1947188 | + | 81 | WP_023441679.1 | hypothetical protein | - |
| MWM15_RS09115 (1947477) | 1947477..1947557 | - | 81 | Protein_1789 | hypothetical protein | - |
| MWM15_RS09120 (1947603) | 1947603..1947797 | - | 195 | WP_000988601.1 | DUF5983 family protein | - |
| MWM15_RS09125 (1947794) | 1947794..1948168 | - | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin |
| MWM15_RS09130 (1948257) | 1948257..1948625 | - | 369 | WP_024174331.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| MWM15_RS09135 (1948699) | 1948699..1948920 | - | 222 | WP_000692346.1 | DUF987 domain-containing protein | - |
| MWM15_RS09140 (1948989) | 1948989..1949465 | - | 477 | WP_001541535.1 | RadC family protein | - |
| MWM15_RS09145 (1949481) | 1949481..1949954 | - | 474 | WP_000855074.1 | antirestriction protein | - |
| MWM15_RS09150 (1950217) | 1950217..1951038 | - | 822 | WP_021580859.1 | DUF932 domain-containing protein | - |
| MWM15_RS09155 (1951259) | 1951259..1951669 | - | 411 | WP_000846704.1 | hypothetical protein | - |
| MWM15_RS09160 (1951685) | 1951685..1952362 | - | 678 | WP_001362823.1 | hypothetical protein | - |
| MWM15_RS09165 (1952498) | 1952498..1953568 | - | 1071 | WP_000102631.1 | patatin-like phospholipase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13898.94 Da Isoelectric Point: 7.8522
>T40549 WP_000854814.1 NZ_AP025675:c1948168-1947794 [Escherichia coli]
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T40549 NZ_AP025675:c1948168-1947794 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTACGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13603.42 Da Isoelectric Point: 6.7386
>AT40549 WP_024174331.1 NZ_AP025675:c1948625-1948257 [Escherichia coli]
VSDTLPGTTHPDDNHDRLWWGLPCTVTPCFGARLVQKGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKT
VSDTLPGTTHPDDNHDRLWWGLPCTVTPCFGARLVQKGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKT
Download Length: 369 bp
>AT40549 NZ_AP025675:c1948625-1948257 [Escherichia coli]
GTGTCAGACACACTGCCCGGGACAACGCATCCCGACGACAATCACGACCGCCTCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGAAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGATGCAGATGCATACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAACGTAA
GTGTCAGACACACTGCCCGGGACAACGCATCCCGACGACAATCACGACCGCCTCTGGTGGGGACTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGAAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAGGCCGGT
TCAGCGATGCAGATGCATACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAACGAAAACGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|