Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2122923..2123194 | Replicon | chromosome |
| Accession | NZ_AP025662 | ||
| Organism | Escherichia coli strain TUM20902 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123053..2123156 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2122923..2123194 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2084_RS09985 | 2119478..2120140 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| M2084_RS09990 | 2120164..2120820 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| M2084_RS09995 | 2120922..2121152 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| M2084_RS10000 | 2121291..2121665 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| M2084_RS10005 | 2121669..2122541 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| M2084_RS10010 | 2122554..2122895 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2122923..2123194 | - | 272 | - | - | Antitoxin |
| - | 2123053..2123156 | + | 104 | - | - | Toxin |
| M2084_RS10015 | 2123291..2123947 | + | 657 | WP_001546849.1 | protein-serine/threonine phosphatase | - |
| M2084_RS10020 | 2123948..2124139 | - | 192 | WP_001296140.1 | YebW family protein | - |
| M2084_RS10025 | 2124244..2124480 | - | 237 | WP_001295499.1 | YebV family protein | - |
| M2084_RS10030 | 2124598..2126037 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2115613..2139744 | 24131 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40514 NZ_AP025662:2123053-2123156 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT40514 NZ_AP025662:c2123194-2122923 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
