Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2123156..2123427 | Replicon | chromosome |
| Accession | NZ_AP025657 | ||
| Organism | Escherichia coli strain TUM13867 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2123286..2123389 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2123156..2123427 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM17_RS09985 | 2119711..2120373 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| MWM17_RS09990 | 2120397..2121053 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| MWM17_RS09995 | 2121155..2121385 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MWM17_RS10000 | 2121524..2121898 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| MWM17_RS10005 | 2121902..2122774 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| MWM17_RS10010 | 2122787..2123128 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2123156..2123427 | - | 272 | - | - | Antitoxin |
| - | 2123286..2123389 | + | 104 | - | - | Toxin |
| MWM17_RS10015 | 2123524..2124180 | + | 657 | WP_001546849.1 | protein-serine/threonine phosphatase | - |
| MWM17_RS10020 | 2124181..2124372 | - | 192 | WP_001296140.1 | YebW family protein | - |
| MWM17_RS10025 | 2124477..2124713 | - | 237 | WP_001295499.1 | YebV family protein | - |
| MWM17_RS10030 | 2124831..2126270 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2115846..2139977 | 24131 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40476 NZ_AP025657:2123286-2123389 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT40476 NZ_AP025657:c2123427-2123156 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
