Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/YafQ-DinJ |
| Location | 1477028..1477593 | Replicon | chromosome |
| Accession | NZ_AP025585 | ||
| Organism | Pyramidobacter piscolens strain CE91-St28 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | D1Y1L2 |
| Locus tag | MWL86_RS07015 | Protein ID | WP_009163744.1 |
| Coordinates | 1477303..1477593 (+) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | D1Y1L3 |
| Locus tag | MWL86_RS07010 | Protein ID | WP_009163745.1 |
| Coordinates | 1477028..1477306 (+) | Length | 93 a.a. |
Genomic Context
Location: 1472414..1472851 (438 bp)
Type: Others
Protein ID: WP_009163751.1
Type: Others
Protein ID: WP_009163751.1
Location: 1472933..1474855 (1923 bp)
Type: Others
Protein ID: WP_244388210.1
Type: Others
Protein ID: WP_244388210.1
Location: 1475142..1475450 (309 bp)
Type: Others
Protein ID: WP_009163749.1
Type: Others
Protein ID: WP_009163749.1
Location: 1475447..1475791 (345 bp)
Type: Others
Protein ID: WP_244388211.1
Type: Others
Protein ID: WP_244388211.1
Location: 1475808..1475960 (153 bp)
Type: Others
Protein ID: WP_244388212.1
Type: Others
Protein ID: WP_244388212.1
Location: 1476276..1476620 (345 bp)
Type: Others
Protein ID: WP_009163746.1
Type: Others
Protein ID: WP_009163746.1
Location: 1477028..1477306 (279 bp)
Type: Antitoxin
Protein ID: WP_009163745.1
Type: Antitoxin
Protein ID: WP_009163745.1
Location: 1477303..1477593 (291 bp)
Type: Toxin
Protein ID: WP_009163744.1
Type: Toxin
Protein ID: WP_009163744.1
Location: 1478076..1478594 (519 bp)
Type: Others
Protein ID: WP_244388213.1
Type: Others
Protein ID: WP_244388213.1
Location: 1478622..1478822 (201 bp)
Type: Others
Protein ID: WP_009163741.1
Type: Others
Protein ID: WP_009163741.1
Location: 1478850..1479206 (357 bp)
Type: Others
Protein ID: WP_009163740.1
Type: Others
Protein ID: WP_009163740.1
Location: 1479345..1480388 (1044 bp)
Type: Others
Protein ID: WP_244388214.1
Type: Others
Protein ID: WP_244388214.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWL86_RS06980 (CE91St28_13730) | 1472414..1472851 | + | 438 | WP_009163751.1 | dUTP diphosphatase | - |
| MWL86_RS06985 (CE91St28_13740) | 1472933..1474855 | + | 1923 | WP_244388210.1 | threonine--tRNA ligase | - |
| MWL86_RS06990 (CE91St28_13750) | 1475142..1475450 | + | 309 | WP_009163749.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| MWL86_RS06995 (CE91St28_13760) | 1475447..1475791 | + | 345 | WP_244388211.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MWL86_RS07000 (CE91St28_13770) | 1475808..1475960 | + | 153 | WP_244388212.1 | hypothetical protein | - |
| MWL86_RS07005 (CE91St28_13780) | 1476276..1476620 | + | 345 | WP_009163746.1 | hypothetical protein | - |
| MWL86_RS07010 (CE91St28_13790) | 1477028..1477306 | + | 279 | WP_009163745.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| MWL86_RS07015 (CE91St28_13800) | 1477303..1477593 | + | 291 | WP_009163744.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
| MWL86_RS07020 (CE91St28_13810) | 1478076..1478594 | + | 519 | WP_244388213.1 | translation initiation factor IF-3 | - |
| MWL86_RS07025 (CE91St28_13820) | 1478622..1478822 | + | 201 | WP_009163741.1 | 50S ribosomal protein L35 | - |
| MWL86_RS07030 (CE91St28_13830) | 1478850..1479206 | + | 357 | WP_009163740.1 | 50S ribosomal protein L20 | - |
| MWL86_RS07035 (CE91St28_13840) | 1479345..1480388 | + | 1044 | WP_244388214.1 | phenylalanine--tRNA ligase subunit alpha | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11092.11 Da Isoelectric Point: 10.0372
>T40437 WP_009163744.1 NZ_AP025585:1477303-1477593 [Pyramidobacter piscolens]
VRQTKLTVKLTTAFKKDYKLAMKRGLKLELLDAVIEQLAMGKVLPKIYRDHELAGSWKGHRECHILSDWLLIYRIEESVL
VLTISRTGTHGDLFDK
VRQTKLTVKLTTAFKKDYKLAMKRGLKLELLDAVIEQLAMGKVLPKIYRDHELAGSWKGHRECHILSDWLLIYRIEESVL
VLTISRTGTHGDLFDK
Download Length: 291 bp
>T40437 NZ_AP025585:1477303-1477593 [Pyramidobacter piscolens]
GTGAGACAGACAAAGCTGACCGTCAAACTGACCACGGCATTTAAGAAGGACTACAAGCTCGCAATGAAGCGGGGATTAAA
ACTCGAACTTCTGGATGCCGTGATCGAACAGCTTGCCATGGGAAAGGTTCTGCCGAAGATCTACAGGGATCATGAGCTGG
CCGGAAGCTGGAAAGGACACAGGGAATGCCATATCCTCTCCGATTGGCTTTTGATCTATCGGATTGAAGAAAGCGTGCTG
GTGCTGACTATCTCCCGAACGGGAACGCACGGCGACCTGTTTGATAAATGA
GTGAGACAGACAAAGCTGACCGTCAAACTGACCACGGCATTTAAGAAGGACTACAAGCTCGCAATGAAGCGGGGATTAAA
ACTCGAACTTCTGGATGCCGTGATCGAACAGCTTGCCATGGGAAAGGTTCTGCCGAAGATCTACAGGGATCATGAGCTGG
CCGGAAGCTGGAAAGGACACAGGGAATGCCATATCCTCTCCGATTGGCTTTTGATCTATCGGATTGAAGAAAGCGTGCTG
GTGCTGACTATCTCCCGAACGGGAACGCACGGCGACCTGTTTGATAAATGA
Antitoxin
Download Length: 93 a.a. Molecular weight: 10176.64 Da Isoelectric Point: 4.5720
>AT40437 WP_009163745.1 NZ_AP025585:1477028-1477306 [Pyramidobacter piscolens]
MAGTTTNISIRMDSDLKAQADALFGELGMNLTTAFNIFVRQSLREGGIPFDICLHQPRQETIAAMLEAERIAKDPSVKGY
TDLDELFADLKK
MAGTTTNISIRMDSDLKAQADALFGELGMNLTTAFNIFVRQSLREGGIPFDICLHQPRQETIAAMLEAERIAKDPSVKGY
TDLDELFADLKK
Download Length: 279 bp
>AT40437 NZ_AP025585:1477028-1477306 [Pyramidobacter piscolens]
ATGGCTGGAACAACTACCAATATCAGCATCCGTATGGACAGTGACTTGAAAGCACAGGCAGACGCCTTATTCGGTGAGCT
TGGCATGAATCTTACGACGGCTTTCAACATCTTTGTGCGTCAGTCTCTCCGTGAGGGGGGGATTCCCTTTGATATCTGCC
TCCATCAGCCACGCCAGGAGACGATTGCCGCGATGCTGGAAGCGGAGAGGATTGCGAAAGACCCGTCAGTAAAGGGTTAT
ACCGACCTTGACGAGCTGTTCGCGGACCTTAAAAAGTGA
ATGGCTGGAACAACTACCAATATCAGCATCCGTATGGACAGTGACTTGAAAGCACAGGCAGACGCCTTATTCGGTGAGCT
TGGCATGAATCTTACGACGGCTTTCAACATCTTTGTGCGTCAGTCTCTCCGTGAGGGGGGGATTCCCTTTGATATCTGCC
TCCATCAGCCACGCCAGGAGACGATTGCCGCGATGCTGGAAGCGGAGAGGATTGCGAAAGACCCGTCAGTAAAGGGTTAT
ACCGACCTTGACGAGCTGTTCGCGGACCTTAAAAAGTGA