Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989352..1989623 | Replicon | chromosome |
| Accession | NZ_AP025546 | ||
| Organism | Escherichia coli strain LR-06 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989482..1989585 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989352..1989623 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE22_RS09680 | 1985907..1986569 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| QUE22_RS09685 | 1986593..1987249 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QUE22_RS09690 | 1987351..1987581 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QUE22_RS09695 | 1987720..1988094 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QUE22_RS09700 | 1988098..1988970 | + | 873 | WP_061356833.1 | copper homeostasis membrane protein CopD | - |
| QUE22_RS09705 | 1988983..1989324 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1989352..1989623 | - | 272 | - | - | Antitoxin |
| - | 1989482..1989585 | + | 104 | - | - | Toxin |
| QUE22_RS09710 | 1989720..1990376 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| QUE22_RS09715 | 1990377..1990568 | - | 192 | WP_001338167.1 | YebW family protein | - |
| QUE22_RS09720 | 1990673..1990909 | - | 237 | WP_001338166.1 | YebV family protein | - |
| QUE22_RS09725 | 1991027..1992466 | - | 1440 | WP_094304313.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40381 NZ_AP025546:1989482-1989585 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT40381 NZ_AP025546:c1989623-1989352 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
