Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/Phd(antitoxin) |
Location | 599322..599869 | Replicon | chromosome |
Accession | NZ_AP025471 | ||
Organism | Vibrio coralliirubri strain DSM 27495 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | OCV20_RS19150 | Protein ID | WP_086775905.1 |
Coordinates | 599322..599624 (-) | Length | 101 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A7W4GJX8 |
Locus tag | OCV20_RS19155 | Protein ID | WP_017093596.1 |
Coordinates | 599612..599869 (-) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OCV20_RS19120 | 594746..595714 | - | 969 | WP_086774347.1 | tyrosine-type recombinase/integrase | - |
OCV20_RS19125 | 595815..596225 | + | 411 | WP_086774348.1 | DUF3319 domain-containing protein | - |
OCV20_RS19130 | 596188..596499 | + | 312 | WP_008221404.1 | stress response translation initiation inhibitor YciH | - |
OCV20_RS19135 | 596802..598148 | + | 1347 | WP_108721727.1 | ISNCY family transposase | - |
OCV20_RS19140 | 598472..598894 | + | 423 | WP_086775907.1 | phage protein | - |
OCV20_RS19145 | 599011..599268 | - | 258 | WP_086775906.1 | hypothetical protein | - |
OCV20_RS19150 | 599322..599624 | - | 303 | WP_086775905.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
OCV20_RS19155 | 599612..599869 | - | 258 | WP_017093596.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
OCV20_RS19160 | 599980..600519 | - | 540 | WP_076652154.1 | hypothetical protein | - |
OCV20_RS19165 | 600516..601526 | - | 1011 | WP_086775904.1 | hypothetical protein | - |
OCV20_RS19170 | 601631..601978 | - | 348 | WP_086775903.1 | hypothetical protein | - |
OCV20_RS19175 | 602106..602468 | - | 363 | WP_086775902.1 | hypothetical protein | - |
OCV20_RS19180 | 602979..603389 | - | 411 | WP_086775900.1 | hypothetical protein | - |
OCV20_RS19185 | 603386..603814 | - | 429 | WP_086775899.1 | M15 family metallopeptidase | - |
OCV20_RS19190 | 603862..604302 | - | 441 | WP_086775898.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 101 a.a. Molecular weight: 11737.57 Da Isoelectric Point: 5.2080
>T40295 WP_086775905.1 NZ_AP025471:c599624-599322 [Vibrio coralliirubri]
MAEVIWSEPALSDLNDIAEYIALENLVAAKQLVQNVFGKVERLVDFPESGRRPPELEHLNYREVVVNPCRVFYKQEADKV
YILFVMRAERDLRRFLLSKQ
MAEVIWSEPALSDLNDIAEYIALENLVAAKQLVQNVFGKVERLVDFPESGRRPPELEHLNYREVVVNPCRVFYKQEADKV
YILFVMRAERDLRRFLLSKQ
Download Length: 303 bp
>T40295 NZ_AP025471:c599624-599322 [Vibrio coralliirubri]
ATGGCTGAAGTGATTTGGAGTGAGCCCGCGTTATCTGACCTTAACGATATCGCGGAATACATTGCTCTTGAAAATTTGGT
CGCAGCCAAACAACTCGTTCAAAACGTCTTCGGCAAAGTCGAACGCCTCGTAGACTTTCCTGAGTCTGGACGTCGGCCTC
CCGAGCTCGAGCATCTCAATTATCGTGAAGTCGTGGTGAATCCGTGTCGGGTTTTTTACAAACAAGAAGCTGACAAGGTC
TACATCCTGTTTGTGATGCGTGCGGAGCGAGATTTGCGTCGATTTTTACTGAGTAAACAGTAA
ATGGCTGAAGTGATTTGGAGTGAGCCCGCGTTATCTGACCTTAACGATATCGCGGAATACATTGCTCTTGAAAATTTGGT
CGCAGCCAAACAACTCGTTCAAAACGTCTTCGGCAAAGTCGAACGCCTCGTAGACTTTCCTGAGTCTGGACGTCGGCCTC
CCGAGCTCGAGCATCTCAATTATCGTGAAGTCGTGGTGAATCCGTGTCGGGTTTTTTACAAACAAGAAGCTGACAAGGTC
TACATCCTGTTTGTGATGCGTGCGGAGCGAGATTTGCGTCGATTTTTACTGAGTAAACAGTAA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9679.15 Da Isoelectric Point: 6.7273
>AT40295 WP_017093596.1 NZ_AP025471:c599869-599612 [Vibrio coralliirubri]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYQFMQNRLAILEGIARGERAISEGKELSHDEAKDKM
SKWLK
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLVDVDDYQFMQNRLAILEGIARGERAISEGKELSHDEAKDKM
SKWLK
Download Length: 258 bp
>AT40295 NZ_AP025471:c599869-599612 [Vibrio coralliirubri]
ATGAAAGTCGAGCTCGTTACTTCCCTTAAGCGTCAAGCGACCAAAATCCTTGCCGACCTACACGACACCAAAGAGCCCGT
GTTGATCACTGAGCATGGCAAACCTTCTGCGTATCTCGTGGATGTTGACGATTACCAGTTTATGCAAAACCGCTTGGCTA
TCCTTGAAGGGATCGCACGTGGTGAGCGTGCCATTTCTGAAGGCAAGGAACTGAGTCATGACGAAGCTAAAGACAAGATG
TCAAAATGGCTGAAGTGA
ATGAAAGTCGAGCTCGTTACTTCCCTTAAGCGTCAAGCGACCAAAATCCTTGCCGACCTACACGACACCAAAGAGCCCGT
GTTGATCACTGAGCATGGCAAACCTTCTGCGTATCTCGTGGATGTTGACGATTACCAGTTTATGCAAAACCGCTTGGCTA
TCCTTGAAGGGATCGCACGTGGTGAGCGTGCCATTTCTGAAGGCAAGGAACTGAGTCATGACGAAGCTAAAGACAAGATG
TCAAAATGGCTGAAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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