Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3507526..3507674 | Replicon | chromosome |
| Accession | NZ_AP025334 | ||
| Organism | Phytobacter diazotrophicus strain TA9734 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3507526..3507628 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3507526..3507674 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6445_RS16885 | 3502686..3503021 | + | 336 | WP_047369725.1 | hypothetical protein | - |
| L6445_RS16890 | 3503037..3503375 | + | 339 | WP_125124256.1 | Rrf2 family transcriptional regulator | - |
| L6445_RS16895 | 3503514..3506021 | + | 2508 | WP_125124957.1 | exonuclease | - |
| L6445_RS16900 | 3506086..3506358 | + | 273 | WP_107222989.1 | excisionase | - |
| L6445_RS16905 | 3506333..3507439 | + | 1107 | WP_125124958.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3507526..3507628 | - | 103 | - | - | Toxin |
| - | 3507526..3507674 | + | 149 | - | - | Antitoxin |
| L6445_RS16910 | 3507785..3508126 | - | 342 | WP_107222991.1 | YebY family protein | - |
| L6445_RS16915 | 3508141..3509010 | - | 870 | WP_079496722.1 | copper homeostasis membrane protein CopD | - |
| L6445_RS16920 | 3509012..3509386 | - | 375 | WP_071195198.1 | CopC domain-containing protein YobA | - |
| L6445_RS16925 | 3509524..3509754 | + | 231 | WP_039078743.1 | DNA polymerase III subunit theta | - |
| L6445_RS16930 | 3509751..3510428 | + | 678 | WP_125124959.1 | exodeoxyribonuclease X | - |
| L6445_RS16935 | 3510425..3512485 | - | 2061 | WP_125124960.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | gtrB / hsiC1/vipB / hsiB1/vipA / flhA / cheZ / cheY / cheB / cheR / cheW / cheA / motB / motA / flhC / flhD | 3306205..3621523 | 315318 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T40261 NZ_AP025334:c3507628-3507526 [Phytobacter diazotrophicus]
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCATGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 149 bp
>AT40261 NZ_AP025334:3507526-3507674 [Phytobacter diazotrophicus]
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
AAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCATGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGGCAAA
