Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3026305..3026450 | Replicon | chromosome |
| Accession | NZ_AP025246 | ||
| Organism | Klebsiella pneumoniae strain OCU_hvKP1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3026312..3026414 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3026305..3026450 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6440_RS14905 | 3021837..3023270 | + | 1434 | WP_236946481.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L6440_RS14910 | 3023386..3023625 | + | 240 | WP_002911393.1 | YebV family protein | - |
| L6440_RS14915 | 3023723..3023914 | + | 192 | WP_002911395.1 | YebW family protein | - |
| L6440_RS14920 | 3023911..3024564 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| L6440_RS14925 | 3024721..3025689 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| L6440_RS14930 | 3025794..3025937 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3026305..3026450 | + | 146 | - | - | Antitoxin |
| - | 3026312..3026414 | - | 103 | - | - | Toxin |
| L6440_RS14935 | 3026573..3026911 | - | 339 | WP_002911404.1 | YebY family protein | - |
| L6440_RS14940 | 3026928..3027797 | - | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| L6440_RS14945 | 3027801..3028175 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L6440_RS14950 | 3028288..3028518 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L6440_RS14955 | 3028597..3029256 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| L6440_RS14960 | 3029260..3031320 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T40181 NZ_AP025246:c3026414-3026312 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT40181 NZ_AP025246:3026305-3026450 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
