Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1987359..1987630 | Replicon | chromosome |
| Accession | NZ_AP025220 | ||
| Organism | Escherichia coli strain 2017.11.01CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1987489..1987592 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1987359..1987630 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH31_RS09605 | 1983914..1984576 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| LPH31_RS09610 | 1984600..1985256 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LPH31_RS09615 | 1985358..1985588 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LPH31_RS09620 | 1985727..1986101 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LPH31_RS09625 | 1986105..1986977 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| LPH31_RS09630 | 1986990..1987331 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1987359..1987630 | - | 272 | - | - | Antitoxin |
| - | 1987489..1987592 | + | 104 | - | - | Toxin |
| LPH31_RS09635 | 1987727..1988383 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| LPH31_RS09640 | 1988384..1988575 | - | 192 | WP_001338167.1 | YebW family protein | - |
| LPH31_RS09645 | 1988680..1988916 | - | 237 | WP_001338166.1 | YebV family protein | - |
| LPH31_RS09650 | 1989034..1990473 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40149 NZ_AP025220:1987489-1987592 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT40149 NZ_AP025220:c1987630-1987359 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
