Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 292589..292857 | Replicon | chromosome |
| Accession | NZ_AP025214 | ||
| Organism | Escherichia coli strain 2017.09.02CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 292717..292819 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 292589..292857 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH32_RS01515 | 289142..289804 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LPH32_RS01520 | 289828..290484 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LPH32_RS01525 | 290586..290816 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LPH32_RS01530 | 290955..291329 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| LPH32_RS01535 | 291333..292205 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| LPH32_RS01540 | 292218..292559 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 292589..292857 | - | 269 | - | - | Antitoxin |
| - | 292717..292819 | + | 103 | - | - | Toxin |
| LPH32_RS01545 | 292954..293610 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| LPH32_RS01550 | 293611..293802 | - | 192 | WP_001317886.1 | YebW family protein | - |
| LPH32_RS01555 | 293907..294143 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LPH32_RS01560 | 294261..295700 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 269537..298413 | 28876 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T40116 NZ_AP025214:292717-292819 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT40116 NZ_AP025214:c292857-292589 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
