Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1931660..1931931 | Replicon | chromosome |
| Accession | NZ_AP025205 | ||
| Organism | Escherichia coli strain 2017.04.03CC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1931790..1931893 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1931660..1931931 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH27_RS09230 | 1928215..1928877 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LPH27_RS09235 | 1928901..1929557 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LPH27_RS09240 | 1929659..1929889 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LPH27_RS09245 | 1930028..1930402 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LPH27_RS09250 | 1930406..1931278 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| LPH27_RS09255 | 1931291..1931632 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1931660..1931931 | - | 272 | - | - | Antitoxin |
| - | 1931790..1931893 | + | 104 | - | - | Toxin |
| LPH27_RS09260 | 1932028..1932684 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| LPH27_RS09265 | 1932685..1932876 | - | 192 | WP_001338167.1 | YebW family protein | - |
| LPH27_RS09270 | 1932981..1933217 | - | 237 | WP_001338166.1 | YebV family protein | - |
| LPH27_RS09275 | 1933335..1934774 | - | 1440 | WP_024238487.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40072 NZ_AP025205:1931790-1931893 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT40072 NZ_AP025205:c1931931-1931660 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
