Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /GNAT-DUF1778 |
Location | 1746693..1747492 | Replicon | chromosome |
Accession | NZ_AP025153 | ||
Organism | Vibrio penaeicida strain TUMSAT-OK1 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | LDP65_RS26840 | Protein ID | WP_126610250.1 |
Coordinates | 1746693..1747226 (-) | Length | 178 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | LDP65_RS26845 | Protein ID | WP_126610249.1 |
Coordinates | 1747223..1747492 (-) | Length | 90 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LDP65_RS26805 | 1742001..1742165 | + | 165 | WP_224164852.1 | beta family protein | - |
LDP65_RS26810 | 1742251..1742502 | + | 252 | WP_224164853.1 | hypothetical protein | - |
LDP65_RS26815 | 1742546..1743073 | + | 528 | WP_224164938.1 | beta family protein | - |
LDP65_RS26820 | 1744025..1744414 | - | 390 | WP_224164854.1 | hypothetical protein | - |
LDP65_RS26825 | 1744645..1744857 | - | 213 | WP_224164855.1 | hypothetical protein | - |
LDP65_RS26830 | 1745260..1745958 | - | 699 | WP_224164779.1 | 5'-nucleotidase C-terminal domain-containing protein | - |
LDP65_RS26835 | 1745955..1746272 | - | 318 | WP_224164781.1 | hypothetical protein | - |
LDP65_RS26840 | 1746693..1747226 | - | 534 | WP_126610250.1 | GNAT family N-acetyltransferase | Toxin |
LDP65_RS26845 | 1747223..1747492 | - | 270 | WP_126610249.1 | DUF1778 domain-containing protein | Antitoxin |
LDP65_RS26850 | 1747830..1748222 | - | 393 | WP_185829958.1 | hypothetical protein | - |
LDP65_RS31130 | 1748998..1749324 | - | 327 | WP_263422616.1 | LysE family transporter | - |
LDP65_RS26860 | 1749321..1749560 | - | 240 | WP_224164856.1 | hypothetical protein | - |
LDP65_RS26865 | 1749581..1750093 | - | 513 | WP_224164783.1 | class I SAM-dependent methyltransferase | - |
LDP65_RS26870 | 1750328..1751155 | + | 828 | WP_126607258.1 | AraC family transcriptional regulator | - |
LDP65_RS26875 | 1751414..1751644 | + | 231 | WP_126607257.1 | hypothetical protein | - |
LDP65_RS26880 | 1751859..1752404 | + | 546 | WP_224055510.1 | DUF1566 domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 178 a.a. Molecular weight: 20100.41 Da Isoelectric Point: 9.1838
>T39946 WP_126610250.1 NZ_AP025153:c1747226-1746693 [Vibrio penaeicida]
VSCGKEFVELSKLYHDRNSFDCGEQELNTFIRTQAAKHMEAGISRTMILPSAQPLLNQKFAICAFYSVAPSSISRETLPA
QLAKKLPRYPIPVFLLAQLAVHKEFQGSGLGKVSLVRALKYLWEVNHHMRAYAIVVDCLNDSAQAFYARFGFEVLCEHNG
RIRMFLAMKTVERLFNQ
VSCGKEFVELSKLYHDRNSFDCGEQELNTFIRTQAAKHMEAGISRTMILPSAQPLLNQKFAICAFYSVAPSSISRETLPA
QLAKKLPRYPIPVFLLAQLAVHKEFQGSGLGKVSLVRALKYLWEVNHHMRAYAIVVDCLNDSAQAFYARFGFEVLCEHNG
RIRMFLAMKTVERLFNQ
Download Length: 534 bp
>T39946 NZ_AP025153:c1747226-1746693 [Vibrio penaeicida]
GTGAGTTGTGGTAAAGAGTTTGTAGAACTTAGTAAATTATATCACGACCGAAACTCATTCGACTGTGGTGAGCAGGAGCT
AAATACATTCATCAGAACTCAAGCAGCAAAGCATATGGAAGCAGGTATTAGTCGAACAATGATTCTTCCTAGTGCTCAGC
CATTGCTTAATCAGAAGTTTGCAATATGTGCATTTTACAGTGTTGCGCCTAGTTCAATCAGTCGAGAAACCTTACCAGCG
CAACTAGCAAAGAAACTTCCTCGATATCCCATTCCAGTATTTCTTTTAGCTCAGTTAGCTGTGCATAAGGAATTTCAGGG
CTCTGGGCTAGGAAAAGTCAGTTTAGTTCGTGCACTAAAGTACCTTTGGGAAGTTAACCACCATATGAGGGCGTATGCTA
TTGTCGTGGACTGTCTGAACGATTCAGCACAGGCATTCTATGCAAGATTTGGCTTTGAAGTATTGTGTGAACATAATGGA
CGCATTCGCATGTTTCTAGCAATGAAAACGGTAGAAAGACTTTTTAACCAATGA
GTGAGTTGTGGTAAAGAGTTTGTAGAACTTAGTAAATTATATCACGACCGAAACTCATTCGACTGTGGTGAGCAGGAGCT
AAATACATTCATCAGAACTCAAGCAGCAAAGCATATGGAAGCAGGTATTAGTCGAACAATGATTCTTCCTAGTGCTCAGC
CATTGCTTAATCAGAAGTTTGCAATATGTGCATTTTACAGTGTTGCGCCTAGTTCAATCAGTCGAGAAACCTTACCAGCG
CAACTAGCAAAGAAACTTCCTCGATATCCCATTCCAGTATTTCTTTTAGCTCAGTTAGCTGTGCATAAGGAATTTCAGGG
CTCTGGGCTAGGAAAAGTCAGTTTAGTTCGTGCACTAAAGTACCTTTGGGAAGTTAACCACCATATGAGGGCGTATGCTA
TTGTCGTGGACTGTCTGAACGATTCAGCACAGGCATTCTATGCAAGATTTGGCTTTGAAGTATTGTGTGAACATAATGGA
CGCATTCGCATGTTTCTAGCAATGAAAACGGTAGAAAGACTTTTTAACCAATGA
Antitoxin
Download Length: 90 a.a. Molecular weight: 9815.21 Da Isoelectric Point: 4.3705
>AT39946 WP_126610249.1 NZ_AP025153:c1747492-1747223 [Vibrio penaeicida]
MATARLDIRLDEEIKAKAEKASALLGLKSLTEYVVRLMDEDATQVIEEHESIVVKDSVFDEFMAACDKAKAPNQALLEAA
KFTDESGIK
MATARLDIRLDEEIKAKAEKASALLGLKSLTEYVVRLMDEDATQVIEEHESIVVKDSVFDEFMAACDKAKAPNQALLEAA
KFTDESGIK
Download Length: 270 bp
>AT39946 NZ_AP025153:c1747492-1747223 [Vibrio penaeicida]
ATGGCAACAGCACGTTTAGATATCCGCCTTGATGAAGAGATAAAAGCGAAAGCTGAAAAGGCATCAGCATTGCTTGGTCT
GAAAAGTTTAACTGAATATGTAGTTAGGCTTATGGACGAAGATGCAACACAGGTAATTGAAGAGCACGAAAGTATCGTGG
TTAAGGATAGTGTCTTTGACGAATTTATGGCTGCTTGTGACAAAGCAAAAGCGCCAAATCAAGCTTTGTTGGAAGCTGCA
AAATTCACAGATGAGAGCGGTATCAAGTGA
ATGGCAACAGCACGTTTAGATATCCGCCTTGATGAAGAGATAAAAGCGAAAGCTGAAAAGGCATCAGCATTGCTTGGTCT
GAAAAGTTTAACTGAATATGTAGTTAGGCTTATGGACGAAGATGCAACACAGGTAATTGAAGAGCACGAAAGTATCGTGG
TTAAGGATAGTGTCTTTGACGAATTTATGGCTGCTTGTGACAAAGCAAAAGCGCCAAATCAAGCTTTGTTGGAAGCTGCA
AAATTCACAGATGAGAGCGGTATCAAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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