Detailed information of TA system TA039944

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): /GNAT-DUF1778
• Location: 1665293..1666092
• Replicon: chromosome
• Accession: NZ_AP025153
• Organism: Vibrio penaeicida strain TUMSAT-OK1

Toxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: LDP65_RS26295
• Protein ID: WP_126610250.1
• Coordinates: 1665293..1665826 (-)
• Length: 178 a.a.

Antitoxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: LDP65_RS26300
• Protein ID: WP_126610249.1
• Coordinates: 1665823..1666092 (-)
• Length: 90 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• GNAT domain (97-153)

Antitoxin

• Vibrio phage ICP1, Orf50 (2-81)

Sequences

Toxin

Protein

• Length: 178 a.a.
• Molecular weight: 20100.41 Da
• Isoelectric Point: 9.1838

>T39944 WP_126610250.1 NZ_AP025153:c1665826-1665293 [Vibrio penaeicida]
VSCGKEFVELSKLYHDRNSFDCGEQELNTFIRTQAAKHMEAGISRTMILPSAQPLLNQKFAICAFYSVAPSSISRETLPA
QLAKKLPRYPIPVFLLAQLAVHKEFQGSGLGKVSLVRALKYLWEVNHHMRAYAIVVDCLNDSAQAFYARFGFEVLCEHNG
RIRMFLAMKTVERLFNQ

Nucleotide

• Length: 534 bp

>T39944 NZ_AP025153:c1665826-1665293 [Vibrio penaeicida]
GTGAGTTGTGGTAAAGAGTTTGTAGAACTTAGTAAATTATATCACGACCGAAACTCATTCGACTGTGGTGAGCAGGAGCT
AAATACATTCATCAGAACTCAAGCAGCAAAGCATATGGAAGCAGGTATTAGTCGAACAATGATTCTTCCTAGTGCTCAGC
CATTGCTTAATCAGAAGTTTGCAATATGTGCATTTTACAGTGTTGCGCCTAGTTCAATCAGTCGAGAAACCTTACCAGCG
CAACTAGCAAAGAAACTTCCTCGATATCCCATTCCAGTATTTCTTTTAGCTCAGTTAGCTGTGCATAAGGAATTTCAGGG
CTCTGGGCTAGGAAAAGTCAGTTTAGTTCGTGCACTAAAGTACCTTTGGGAAGTTAACCACCATATGAGGGCGTATGCTA
TTGTCGTGGACTGTCTGAACGATTCAGCACAGGCATTCTATGCAAGATTTGGCTTTGAAGTATTGTGTGAACATAATGGA
CGCATTCGCATGTTTCTAGCAATGAAAACGGTAGAAAGACTTTTTAACCAATGA

Antitoxin

Protein

• Length: 90 a.a.
• Molecular weight: 9815.21 Da
• Isoelectric Point: 4.3705

>AT39944 WP_126610249.1 NZ_AP025153:c1666092-1665823 [Vibrio penaeicida]
MATARLDIRLDEEIKAKAEKASALLGLKSLTEYVVRLMDEDATQVIEEHESIVVKDSVFDEFMAACDKAKAPNQALLEAA
KFTDESGIK

Nucleotide

• Length: 270 bp

>AT39944 NZ_AP025153:c1666092-1665823 [Vibrio penaeicida]
ATGGCAACAGCACGTTTAGATATCCGCCTTGATGAAGAGATAAAAGCGAAAGCTGAAAAGGCATCAGCATTGCTTGGTCT
GAAAAGTTTAACTGAATATGTAGTTAGGCTTATGGACGAAGATGCAACACAGGTAATTGAAGAGCACGAAAGTATCGTGG
TTAAGGATAGTGTCTTTGACGAATTTATGGCTGCTTGTGACAAAGCAAAAGCGCCAAATCAAGCTTTGTTGGAAGCTGCA
AAATTCACAGATGAGAGCGGTATCAAGTGA