Detailed information of TA system TA039943

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): /GNAT-DUF1778
• Location: 1652318..1653084
• Replicon: chromosome
• Accession: NZ_AP025153
• Organism: Vibrio penaeicida strain TUMSAT-OK1

Toxin (Protein)

• Gene name: -
• Uniprot ID: A0A432DAA5
• Locus tag: LDP65_RS26220
• Protein ID: WP_017053840.1
• Coordinates: 1652587..1653084 (+)
• Length: 166 a.a.

Antitoxin (Protein)

• Gene name: -
• Uniprot ID: -
• Locus tag: LDP65_RS26215
• Protein ID: WP_126608258.1
• Coordinates: 1652318..1652590 (+)
• Length: 91 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LDP65_RS26195	1648016..1648381	-	366	WP_126608616.1	hypothetical protein	-
LDP65_RS26200	1648363..1648842	-	480	WP_126608615.1	type VI secretion system amidase effector protein Tae4	-
LDP65_RS26205	1650437..1650781	-	345	WP_126607806.1	hypothetical protein	-
LDP65_RS26210	1652116..1652208	-	93	WP_221768543.1	DUF3265 domain-containing protein	-
LDP65_RS26215	1652318..1652590	+	273	WP_126608258.1	DUF1778 domain-containing protein	Antitoxin
LDP65_RS26220	1652587..1653084	+	498	WP_017053840.1	GNAT family N-acetyltransferase	Toxin
LDP65_RS26225	1653190..1653597	+	408	WP_126608259.1	hypothetical protein	-
LDP65_RS26230	1654349..1654684	-	336	WP_126607678.1	hypothetical protein	-
LDP65_RS26235	1655035..1656144	+	1110	Protein_1447	IS3 family transposase	-
LDP65_RS26240	1656449..1656625	-	177	WP_224055503.1	hypothetical protein	-
LDP65_RS26245	1656634..1656912	-	279	WP_224055504.1	GNAT family N-acetyltransferase	-
LDP65_RS26250	1657045..1657428	-	384	WP_224055505.1	hypothetical protein	-
LDP65_RS26255	1657587..1658039	-	453	WP_126609048.1	GNAT family N-acetyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	-	-	1638175..1660808	22633
	-	inside	Integron	-	-	1638175..1658620	20445

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• GNAT domain (86-152)

Antitoxin

• Vibrio phage ICP1, Orf50 (2-89)

Sequences

Toxin

Protein

• Length: 166 a.a.
• Molecular weight: 18458.12 Da
• Isoelectric Point: 8.8085

>T39943 WP_017053840.1 NZ_AP025153:1652587-1653084 [Vibrio penaeicida]
MMNTVLLDKAKHDRNRFNCGIEALNNYLKVMASQQAKKDNTRTFVLEDDSDNSHVIGFYTLTMTPIDLKALPDKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADV
RASLG

Nucleotide

• Length: 498 bp

>T39943 NZ_AP025153:1652587-1653084 [Vibrio penaeicida]
ATGATGAATACGGTACTTCTAGATAAAGCTAAACACGATAGAAACCGATTCAACTGTGGCATCGAAGCTCTCAATAATTA
CTTAAAAGTAATGGCGAGTCAGCAAGCAAAGAAGGACAACACCAGAACGTTTGTTTTGGAAGATGATAGCGACAACTCAC
ATGTCATTGGCTTTTACACACTAACAATGACACCAATTGACTTAAAGGCATTGCCTGATAAGTTACAAAAAAAGCACCAA
TCATCCACCTCCGGTGGTCTGATTGCCCGTCTTGCTGTCGATGACCGATACAAAGGGAAAGGCTTTGGTGAGTGGCTGCT
TATCGACGCACTCAGAAAGCTATTAGCCGCTAGTGATAGCGTTGCATTTCCAGTTGTTATCGTTGATGCCAAAGACGGAG
CAAAACATTTCTATGAACGCTATGGTTTTCAAGCATTTCAAGACGCTGAAAACAAACTCTTCATCACCATTGCAGATGTG
AGAGCAAGCTTAGGCTAG

Antitoxin

Protein

• Length: 91 a.a.
• Molecular weight: 9765.25 Da
• Isoelectric Point: 8.5960

>AT39943 WP_126608258.1 NZ_AP025153:1652318-1652590 [Vibrio penaeicida]
MATTLPRITARVDVDTQDLLTKAAAIAGMSSINSFVLSAAIEKAKQVIEREQALKLSQTDAMLLMEALDRPATQNSKLKA
AADRYESKTQ

Nucleotide

• Length: 273 bp

>AT39943 NZ_AP025153:1652318-1652590 [Vibrio penaeicida]
ATGGCTACTACTTTGCCTCGCATCACCGCTAGAGTTGATGTCGATACACAAGACTTACTTACTAAGGCTGCCGCGATCGC
CGGCATGTCTAGCATCAACTCGTTTGTTCTAAGCGCTGCAATCGAAAAAGCTAAACAAGTCATCGAACGTGAACAGGCTT
TAAAACTGAGCCAAACTGATGCGATGTTGCTTATGGAAGCTTTAGACCGTCCTGCGACACAGAACTCAAAACTAAAAGCT
GCTGCTGATCGATACGAGAGCAAAACTCAATGA

Structures

Toxin

• AlphaFold DB: A0A432DAA5