Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2032020..2032186 | Replicon | chromosome |
| Accession | NZ_AP025009 | ||
| Organism | Raoultella ornithinolytica strain NUITM-VR1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2032078..2032181 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2032020..2032186 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO46_RS09490 (NUITMVR1_18670) | 2027158..2029218 | + | 2061 | WP_032724251.1 | oligopeptidase B | - |
| LDO46_RS09495 (NUITMVR1_18680) | 2029224..2029883 | - | 660 | WP_004863981.1 | exodeoxyribonuclease X | - |
| LDO46_RS09500 (NUITMVR1_18690) | 2029962..2030192 | - | 231 | WP_118859923.1 | DNA polymerase III subunit theta | - |
| LDO46_RS09505 (NUITMVR1_18700) | 2030319..2030693 | + | 375 | WP_118859922.1 | CopC domain-containing protein YobA | - |
| LDO46_RS09510 (NUITMVR1_18710) | 2030697..2031566 | + | 870 | WP_004863974.1 | copper homeostasis membrane protein CopD | - |
| LDO46_RS09515 (NUITMVR1_18720) | 2031583..2031921 | + | 339 | WP_015584012.1 | YebY family protein | - |
| - | 2032020..2032186 | - | 167 | - | - | Antitoxin |
| - | 2032078..2032181 | + | 104 | - | - | Toxin |
| LDO46_RS09520 (NUITMVR1_18730) | 2032491..2032634 | - | 144 | WP_054828791.1 | Ecr family regulatory small membrane protein | - |
| LDO46_RS09525 (NUITMVR1_18740) | 2032755..2033726 | - | 972 | WP_172412537.1 | VirK/YbjX family protein | - |
| LDO46_RS09530 (NUITMVR1_18750) | 2033869..2034513 | + | 645 | WP_004863967.1 | protein-serine/threonine phosphatase | - |
| LDO46_RS09535 (NUITMVR1_18760) | 2034519..2034710 | - | 192 | WP_004863962.1 | YebW family protein | - |
| LDO46_RS09540 (NUITMVR1_18770) | 2034804..2035043 | - | 240 | WP_004863958.1 | YebV family protein | - |
| LDO46_RS09545 (NUITMVR1_18780) | 2035158..2036591 | - | 1434 | WP_118859921.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T39888 NZ_AP025009:2032078-2032181 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT39888 NZ_AP025009:c2032186-2032020 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
