Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 467827..468479 Replicon chromosome
Accession NZ_AP024984
Organism Thermus thermophilus strain JCM10941

Toxin (Protein)


Gene name vapC Uniprot ID Q5SKZ2
Locus tag LDO79_RS02635 Protein ID WP_011227982.1
Coordinates 467827..468219 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID Q5SKZ1
Locus tag LDO79_RS02640 Protein ID WP_011227983.1
Coordinates 468219..468479 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LDO79_RS02610 (JCM10941_04990) 464430..464819 + 390 WP_011227977.1 NADH-quinone oxidoreductase subunit 15 -
LDO79_RS02615 (JCM10941_05000) 464822..465919 - 1098 WP_011227978.1 radical SAM family heme chaperone HemW -
LDO79_RS02620 (JCM10941_05010) 465912..466310 - 399 WP_011227979.1 HEPN domain-containing protein -
LDO79_RS02625 (JCM10941_05020) 466300..466617 - 318 WP_011227980.1 nucleotidyltransferase domain-containing protein -
LDO79_RS02630 (JCM10941_05030) 466622..467842 - 1221 WP_011227981.1 glycerate kinase -
LDO79_RS02635 (JCM10941_05040) 467827..468219 - 393 WP_011227982.1 type II toxin-antitoxin system VapC family toxin Toxin
LDO79_RS02640 (JCM10941_05050) 468219..468479 - 261 WP_011227983.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
LDO79_RS02645 (JCM10941_05060) 468512..469768 - 1257 WP_011227984.1 glycolate oxidase subunit GlcF -
LDO79_RS02650 (JCM10941_05070) 469773..470816 - 1044 WP_011227985.1 FAD-binding protein -
LDO79_RS02655 (JCM10941_05080) 470803..472185 - 1383 WP_011227986.1 FAD-linked oxidase C-terminal domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

Antitoxin VapB-like

(1-85)


Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14636.82 Da        Isoelectric Point: 6.8735

>T39883 WP_011227982.1 NZ_AP024984:c468219-467827 [Thermus thermophilus]
MVLDTSALLGILFREEGYEELLEQLRRTRPHKVAAPTLAEAGIVLGARLGFERVHLLFELLTELQAEIVPFTERHAREAI
SAYRRYGRGKHPAGLNFGDCLSYALARVEGEPLLYKGQGFDRTDLAWKPS

Download         Length: 393 bp

>T39883 NZ_AP024984:c468219-467827 [Thermus thermophilus]
ATGGTGCTGGACACCTCCGCCCTCCTGGGCATTCTCTTCCGGGAAGAAGGGTACGAGGAGCTTCTGGAGCAACTCCGGCG
CACCCGCCCCCACAAGGTGGCCGCGCCCACCCTGGCCGAAGCGGGGATCGTCCTGGGCGCCCGGCTGGGCTTTGAGCGGG
TGCATCTTCTCTTTGAACTCCTAACCGAGCTCCAGGCCGAGATCGTGCCCTTCACCGAAAGGCATGCCCGGGAGGCCATC
TCCGCTTACCGGCGCTACGGGCGGGGCAAGCACCCCGCCGGGCTCAACTTTGGGGACTGCCTGAGCTACGCCCTGGCCCG
GGTGGAGGGGGAACCCCTCCTCTACAAGGGCCAGGGCTTTGACCGGACGGACCTGGCGTGGAAGCCCTCCTGA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 10086.61 Da        Isoelectric Point: 5.0285

>AT39883 WP_011227983.1 NZ_AP024984:c468479-468219 [Thermus thermophilus]
MALTIRNKEVERLAEEVARLAGETKTEAVRKALEMRLRELQRKRSFDRVIRFLEEEVWPQIPPELLGKGLSKEEEEEILG
YGKEGY

Download         Length: 261 bp

>AT39883 NZ_AP024984:c468479-468219 [Thermus thermophilus]
ATGGCCCTCACCATTCGCAACAAGGAGGTGGAGCGCCTGGCGGAGGAGGTGGCCCGCCTCGCCGGAGAAACCAAGACGGA
GGCCGTAAGGAAGGCCCTGGAGATGCGCCTTAGGGAACTCCAGAGGAAGCGGAGCTTTGACCGGGTGATCCGCTTCCTGG
AGGAGGAGGTCTGGCCCCAGATCCCGCCGGAGCTTTTGGGGAAGGGGCTCTCCAAGGAAGAGGAGGAAGAAATCCTGGGG
TACGGCAAGGAGGGGTACTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q5SKZ2

Antitoxin

Source ID Structure
AlphaFold DB A0A7R7YHV5

References