Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 951050..951575 Replicon chromosome
Accession NZ_AP024884
Organism Vibrio mangrovi strain CECT 7927

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OCU74_RS20340 Protein ID WP_087482935.1
Coordinates 951288..951575 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OCU74_RS20335 Protein ID WP_087482936.1
Coordinates 951050..951298 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OCU74_RS20310 946131..947093 + 963 WP_087482940.1 transposase -
OCU74_RS20315 947435..948733 - 1299 WP_087482939.1 TRAP transporter large permease subunit -
OCU74_RS20320 948735..949238 - 504 WP_087482938.1 TRAP transporter small permease -
OCU74_RS20325 949248..950234 - 987 WP_087482937.1 TRAP transporter substrate-binding protein -
OCU74_RS20330 950690..950866 + 177 WP_159457482.1 hypothetical protein -
OCU74_RS20335 951050..951298 + 249 WP_087482936.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OCU74_RS20340 951288..951575 + 288 WP_087482935.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OCU74_RS20345 951630..952364 - 735 WP_200807797.1 Fic family protein -
OCU74_RS20350 952542..952955 - 414 WP_087482934.1 GNAT family N-acetyltransferase -
OCU74_RS20355 953057..953809 - 753 WP_087482933.1 EAL domain-containing protein -
OCU74_RS20360 953983..955464 - 1482 WP_087482932.1 methyl-accepting chemotaxis protein -
OCU74_RS20365 955474..956001 - 528 WP_087482931.1 PAS domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-85)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11085.08 Da        Isoelectric Point: 10.6845

>T39793 WP_087482935.1 NZ_AP024884:951288-951575 [Vibrio mangrovi]
MIYKLNFKKSALKEWKKLGSTLQEQFKKKLAERLTNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDIIVVTVLAVGK
RERSDTYHKAMKRLD

Download         Length: 288 bp

>T39793 NZ_AP024884:951288-951575 [Vibrio mangrovi]
ATGATTTATAAGCTAAATTTTAAAAAATCTGCCCTTAAAGAATGGAAGAAACTCGGTTCTACTTTACAGGAGCAATTTAA
GAAAAAATTAGCAGAGAGATTAACTAACCCTCATGTGCCAGCTTCAAAGTTATCCGGAGCTGACAACATGTACAAAATCA
AACTCCGCCAATCAGGTTATCGCTTAGTTTACAAAGTCGAAGACGACATCATCGTAGTTACCGTTTTAGCTGTAGGAAAA
CGTGAACGAAGCGATACTTATCATAAGGCAATGAAACGCTTGGATTGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9121.41 Da        Isoelectric Point: 4.0078

>AT39793 WP_087482936.1 NZ_AP024884:951050-951298 [Vibrio mangrovi]
MTTRILADVAASITELKANPMKVAASAYGQPVAVLNRNEPAFYCVPAETYEMMMDKLEDLELLNIARERESEESISVNLD
DL

Download         Length: 249 bp

>AT39793 NZ_AP024884:951050-951298 [Vibrio mangrovi]
ATGACCACTAGAATCCTAGCTGATGTTGCTGCAAGCATTACTGAATTAAAAGCTAATCCAATGAAAGTTGCGGCCAGTGC
CTATGGTCAACCTGTCGCTGTTCTTAACCGTAATGAACCAGCTTTTTATTGTGTTCCTGCTGAAACTTATGAAATGATGA
TGGATAAGCTTGAAGATCTAGAACTACTAAATATCGCAAGAGAACGCGAATCAGAAGAAAGTATTTCGGTAAACCTTGAT
GATTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References