Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 146175..147595 Replicon chromosome
Accession NZ_AP024872
Organism Vibrio gallicus strain CIP 107863

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag OCU28_RS12395 Protein ID WP_261817997.1
Coordinates 146708..147595 (+) Length 296 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag OCU28_RS12390 Protein ID WP_102477657.1
Coordinates 146175..146708 (+) Length 178 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OCU28_RS12380 141252..142781 + 1530 WP_261817421.1 IS66 family transposase -
OCU28_RS12385 143524..145593 + 2070 WP_261817996.1 YjbH domain-containing protein -
OCU28_RS12390 146175..146708 + 534 WP_102477657.1 hypothetical protein Antitoxin
OCU28_RS12395 146708..147595 + 888 WP_261817997.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
OCU28_RS12400 149201..149971 + 771 WP_261817998.1 GHKL domain-containing protein -
OCU28_RS12405 149943..150644 + 702 WP_261817999.1 response regulator -
OCU28_RS12410 151136..152239 + 1104 WP_261818000.1 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(36-258)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 296 a.a.        Molecular weight: 33864.53 Da        Isoelectric Point: 5.2748

>T39783 WP_261817997.1 NZ_AP024872:146708-147595 [Vibrio gallicus]
MLKEAIQRVVEANPAYAEVTSVIEKEILHHDIMDVLVREGAMQTLTFIGGTSLRLCYNSSRLSEDLNFNGGHDFKPSNFD
GLEQEIQKYIENKYETDVLVSKPTGESQGNTSSWKISIEKESGRPDLPRQKMHIDVCAIPSFDATNRPLINHYSIVSPIE
GLIIPVQSLEETFADKFIALAYRTRRIKPRDVWDLVWIKQQGTKISHELIAKKLEARNKPNTDFEQQLVAQVEKLLTEVE
VKEDFHMEMSRFVPNTIKERTLDNPDYWLYVQSEIKALSQQVLNRPSANPFDMSI

Download         Length: 888 bp

>T39783 NZ_AP024872:146708-147595 [Vibrio gallicus]
ATGTTAAAAGAAGCCATTCAACGGGTAGTTGAAGCAAATCCTGCGTATGCTGAAGTTACGTCTGTTATTGAAAAGGAAAT
TCTGCACCATGACATCATGGATGTCTTAGTTAGAGAAGGTGCAATGCAAACTCTGACGTTCATTGGCGGAACATCGTTGA
GACTCTGCTATAACAGCTCACGGCTATCAGAAGACTTGAATTTCAATGGTGGCCATGATTTTAAACCATCAAATTTCGAT
GGATTGGAGCAAGAGATCCAGAAGTACATTGAAAATAAATACGAAACTGATGTTCTTGTAAGTAAGCCTACTGGGGAATC
TCAAGGGAATACATCGTCATGGAAAATCAGCATTGAGAAGGAATCAGGTCGGCCAGATTTGCCACGTCAGAAGATGCACA
TTGATGTGTGTGCGATTCCGTCATTCGATGCGACGAACCGCCCGCTAATCAATCACTACAGTATCGTTTCCCCAATAGAA
GGTTTAATAATTCCTGTTCAATCACTAGAGGAGACCTTTGCGGATAAGTTTATCGCTTTGGCCTATCGTACTAGGCGCAT
AAAACCACGCGATGTCTGGGACTTAGTTTGGATCAAGCAGCAGGGGACTAAGATCTCCCACGAACTGATCGCAAAGAAAT
TGGAAGCCCGTAACAAGCCGAATACAGACTTTGAGCAACAGTTAGTTGCTCAAGTAGAAAAGCTCCTCACCGAAGTGGAA
GTGAAAGAAGATTTCCATATGGAGATGTCTCGATTTGTACCCAACACCATTAAAGAGCGCACTCTGGATAACCCTGATTA
TTGGCTGTATGTCCAATCTGAGATTAAGGCATTGTCTCAGCAGGTGCTAAACAGACCTAGCGCGAACCCTTTTGATATGA
GTATTTGA

Antitoxin


Download         Length: 178 a.a.        Molecular weight: 19656.97 Da        Isoelectric Point: 10.2748

>AT39783 WP_102477657.1 NZ_AP024872:146175-146708 [Vibrio gallicus]
MKALSKKEQLLSAFAASTKVGGGVLTLAEIAFYLNTQNNIALRKLLTDCVKKGMVRRLAAGIYESTLTPPDPMTAIYKVA
NKIRRGVLNYISLESQLSHTGVISQIVMGRVTMMTKGRTGTFETPYGIIEFTHTSRPVDKIASNIYLDPEIMMYRASNEQ
AISDLRATKRNLHMLEN

Download         Length: 534 bp

>AT39783 NZ_AP024872:146175-146708 [Vibrio gallicus]
ATGAAGGCTCTATCTAAAAAAGAACAACTGCTTTCCGCTTTTGCGGCTTCCACCAAGGTAGGCGGAGGGGTGCTAACGCT
CGCAGAAATTGCGTTTTACCTTAACACCCAAAATAATATCGCCTTGCGTAAGCTCCTTACTGACTGCGTCAAAAAGGGCA
TGGTGCGGAGGTTGGCCGCAGGCATATACGAAAGTACACTTACGCCTCCTGACCCTATGACTGCCATTTATAAAGTTGCT
AACAAGATCAGGAGAGGCGTCTTAAACTATATAAGTTTAGAGAGCCAACTAAGCCATACAGGTGTGATTTCTCAAATTGT
TATGGGCAGAGTGACCATGATGACTAAAGGACGTACAGGTACGTTTGAGACCCCTTATGGCATTATAGAGTTTACACATA
CCTCACGGCCAGTCGATAAGATCGCCTCCAATATCTACCTAGACCCTGAAATTATGATGTACCGAGCGAGCAACGAGCAA
GCTATCTCAGATCTTCGTGCAACCAAACGTAATTTACATATGTTGGAGAACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References