Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2098869..2099009 | Replicon | chromosome |
| Accession | NZ_AP024847 | ||
| Organism | Serratia marcescens strain 2020-O-9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2098913..2099009 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2098869..2099009 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDN81_RS10205 (SMGES_20070) | 2094070..2094495 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| LDN81_RS10210 (SMGES_20080) | 2094688..2095641 | + | 954 | WP_041034678.1 | prolyl aminopeptidase | - |
| LDN81_RS10215 (SMGES_20090) | 2095673..2095903 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| LDN81_RS10220 (SMGES_20100) | 2096249..2096767 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| LDN81_RS10225 (SMGES_20110) | 2097060..2097476 | + | 417 | WP_052475413.1 | CopC domain-containing protein YobA | - |
| LDN81_RS10230 (SMGES_20120) | 2097479..2098360 | + | 882 | WP_041034681.1 | copper homeostasis membrane protein CopD | - |
| LDN81_RS10235 (SMGES_20130) | 2098430..2098771 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2098869..2099009 | - | 141 | - | - | Antitoxin |
| - | 2098913..2099009 | + | 97 | - | - | Toxin |
| LDN81_RS10240 (SMGES_20140) | 2099248..2099655 | + | 408 | WP_223915756.1 | hypothetical protein | - |
| LDN81_RS10245 (SMGES_20150) | 2099652..2099870 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| LDN81_RS10250 (SMGES_20160) | 2099934..2100092 | - | 159 | WP_154232809.1 | hypothetical protein | - |
| LDN81_RS10255 (SMGES_20170) | 2100383..2100733 | + | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| LDN81_RS10260 (SMGES_20180) | 2100917..2102116 | + | 1200 | WP_033638117.1 | trans-2-enoyl-CoA reductase family protein | - |
| LDN81_RS10265 | 2102344..2102562 | + | 219 | WP_033646423.1 | hypothetical protein | - |
| LDN81_RS10270 (SMGES_20190) | 2102734..2103039 | + | 306 | WP_033638119.1 | hypothetical protein | - |
| LDN81_RS10275 (SMGES_20200) | 2103083..2103418 | + | 336 | WP_033638120.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T39750 NZ_AP024847:2098913-2099009 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT39750 NZ_AP024847:c2099009-2098869 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
