Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910492..1910637 | Replicon | chromosome |
| Accession | NZ_AP024784 | ||
| Organism | Klebsiella pneumoniae strain TUM12137 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1910528..1910630 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910492..1910637 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6K11_RS09340 (TUM12137_18010) | 1905622..1907682 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| K6K11_RS09345 (TUM12137_18020) | 1907686..1908345 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6K11_RS09350 (TUM12137_18030) | 1908424..1908654 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6K11_RS09355 (TUM12137_18040) | 1908767..1909141 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6K11_RS09360 (TUM12137_18050) | 1909145..1910014 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6K11_RS09365 (TUM12137_18060) | 1910031..1910369 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1910492..1910637 | - | 146 | - | - | Antitoxin |
| - | 1910528..1910630 | + | 103 | - | - | Toxin |
| K6K11_RS09370 | 1911005..1911148 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6K11_RS09375 (TUM12137_18070) | 1911253..1912221 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6K11_RS09380 (TUM12137_18080) | 1912378..1913031 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| K6K11_RS09385 (TUM12137_18090) | 1913028..1913219 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6K11_RS09390 (TUM12137_18100) | 1913317..1913556 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6K11_RS09395 (TUM12137_18110) | 1913672..1915105 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T39640 NZ_AP024784:1910528-1910630 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT39640 NZ_AP024784:c1910637-1910492 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
