Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1915776..1915921 | Replicon | chromosome |
| Accession | NZ_AP024781 | ||
| Organism | Klebsiella pneumoniae strain TUM12136 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1915812..1915914 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1915776..1915921 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J90_RS09350 (TUM12136_18030) | 1910906..1912966 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| K6J90_RS09355 (TUM12136_18040) | 1912970..1913629 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6J90_RS09360 (TUM12136_18050) | 1913708..1913938 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6J90_RS09365 (TUM12136_18060) | 1914051..1914425 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6J90_RS09370 (TUM12136_18070) | 1914429..1915298 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6J90_RS09375 (TUM12136_18080) | 1915315..1915653 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1915776..1915921 | - | 146 | - | - | Antitoxin |
| - | 1915812..1915914 | + | 103 | - | - | Toxin |
| K6J90_RS09380 | 1916289..1916432 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6J90_RS09385 (TUM12136_18090) | 1916537..1917505 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6J90_RS09390 (TUM12136_18100) | 1917662..1918315 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| K6J90_RS09395 (TUM12136_18110) | 1918312..1918503 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6J90_RS09400 (TUM12136_18120) | 1918601..1918840 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6J90_RS09405 (TUM12136_18130) | 1918956..1920389 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T39621 NZ_AP024781:1915812-1915914 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT39621 NZ_AP024781:c1915921-1915776 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
