Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vagCD/VapC-VagC
Location 60866..61509 Replicon plasmid IncN-R
Accession NZ_AP024773
Organism Klebsiella pneumoniae strain TUM12133

Toxin (Protein)


Gene name vagD Uniprot ID D8L2J9
Locus tag K6J98_RS26320 Protein ID WP_001044770.1
Coordinates 60866..61282 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vagC Uniprot ID D5KTK7
Locus tag K6J98_RS26325 Protein ID WP_001261282.1
Coordinates 61279..61509 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K6J98_RS26285 (TUM12133_50620) 56408..56644 - 237 WP_000993386.1 broad-spectrum mercury transporter MerE -
K6J98_RS26290 (TUM12133_50630) 56641..57003 - 363 WP_001277456.1 mercury resistance co-regulator MerD -
K6J98_RS26295 (TUM12133_50640) 57021..58715 - 1695 WP_000105636.1 mercury(II) reductase -
K6J98_RS26300 (TUM12133_50650) 58767..59189 - 423 WP_001340589.1 organomercurial transporter MerC -
K6J98_RS26305 59225..59335 - 111 Protein_65 mercuric transport protein periplasmic component -
K6J98_RS26315 (TUM12133_50680) 60103..60792 - 690 Protein_67 AAA family ATPase -
K6J98_RS26320 (TUM12133_50690) 60866..61282 - 417 WP_001044770.1 type II toxin-antitoxin system VapC family toxin Toxin
K6J98_RS26325 (TUM12133_50700) 61279..61509 - 231 WP_001261282.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
K6J98_RS26330 61466..61927 + 462 WP_072202616.1 hypothetical protein -
K6J98_RS26335 (TUM12133_50710) 62071..62421 + 351 WP_000493378.1 hypothetical protein -
K6J98_RS26340 (TUM12133_50720) 62472..63215 + 744 WP_000129823.1 hypothetical protein -
K6J98_RS26345 (TUM12133_50730) 63212..63988 + 777 WP_000015958.1 site-specific integrase -
K6J98_RS26930 (TUM12133_50740) 64046..64225 - 180 Protein_74 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid blaKPC-2 / blaOXA-9 / blaTEM-1A / aac(6')-Ib / aadA2 / cmlA1 / ant(3'')-Ia / aac(3)-IVa / aph(4)-Ia - 1..123760 123760
- inside IScluster/Tn aac(6')-Ib - 59351..69827 10476


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-129)

Antitoxin

SpoVT-AbrB domain

(7-47)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 15106.52 Da        Isoelectric Point: 7.1084

>T39578 WP_001044770.1 NZ_AP024773:c61282-60866 [Klebsiella pneumoniae]
VNKTYMLDTCICSFIMREQPEAVLKRLEQAVLRGQRIVVSAITYSEMRFGATGPKASPRHVELVDAFCARLDAILPWDRA
AVDATTEIKVALRMAGTPIGPNDTAIAGHAIAAGAVLVTNNTREFERVPGLVLEDWVR

Download         Length: 417 bp

>T39578 NZ_AP024773:c61282-60866 [Klebsiella pneumoniae]
GTGAACAAGACCTATATGCTCGACACCTGTATCTGCTCGTTCATCATGCGCGAGCAGCCGGAAGCCGTCCTGAAGCGCCT
GGAGCAGGCGGTGCTGCGCGGCCAGCGCATCGTTGTCTCGGCCATCACTTATTCTGAAATGCGCTTCGGGGCCACCGGCC
CGAAGGCCTCCCCGCGCCACGTCGAGCTGGTCGACGCGTTCTGCGCCCGCCTCGATGCCATCCTGCCCTGGGATCGCGCT
GCGGTGGACGCCACCACGGAGATTAAGGTGGCGCTGCGAATGGCCGGGACGCCGATCGGCCCGAACGACACGGCCATTGC
CGGGCACGCCATCGCCGCCGGTGCCGTGCTGGTGACGAATAATACGCGGGAATTTGAGCGGGTACCGGGTCTTGTGCTGG
AAGACTGGGTAAGATAA

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8756.83 Da        Isoelectric Point: 4.4692

>AT39578 WP_001261282.1 NZ_AP024773:c61509-61279 [Klebsiella pneumoniae]
MRTVSIFKNGNNRAIRLPRDLDFEGVSELEIVREGDSIILRPVRPTWGSFAQFEKADPDFMAEREDVVSDEGRFNL

Download         Length: 231 bp

>AT39578 NZ_AP024773:c61509-61279 [Klebsiella pneumoniae]
ATGAGAACTGTATCCATTTTTAAAAACGGCAATAACCGCGCCATTCGTCTGCCCCGCGATCTGGATTTTGAGGGAGTGAG
CGAGCTGGAGATCGTCCGGGAAGGGGACAGCATTATTTTGCGTCCCGTCCGGCCGACCTGGGGCTCGTTCGCGCAGTTCG
AGAAGGCAGACCCGGACTTTATGGCGGAGCGCGAGGACGTTGTCAGCGACGAAGGACGATTTAACCTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GYM2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GZG3

References