Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916962..1917107 | Replicon | chromosome |
| Accession | NZ_AP024766 | ||
| Organism | Klebsiella pneumoniae strain TUM12131 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916998..1917100 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916962..1917107 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J85_RS09355 (TUM12131_18010) | 1912092..1914152 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| K6J85_RS09360 (TUM12131_18020) | 1914156..1914815 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6J85_RS09365 (TUM12131_18030) | 1914894..1915124 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6J85_RS09370 (TUM12131_18040) | 1915237..1915611 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6J85_RS09375 (TUM12131_18050) | 1915615..1916484 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6J85_RS09380 (TUM12131_18060) | 1916501..1916839 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1916962..1917107 | - | 146 | - | - | Antitoxin |
| - | 1916998..1917100 | + | 103 | - | - | Toxin |
| K6J85_RS09385 | 1917475..1917618 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6J85_RS09390 (TUM12131_18070) | 1917723..1918691 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6J85_RS09395 (TUM12131_18080) | 1918848..1919501 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| K6J85_RS09400 (TUM12131_18090) | 1919498..1919689 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6J85_RS09405 (TUM12131_18100) | 1919787..1920026 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6J85_RS09410 (TUM12131_18110) | 1920142..1921575 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T39526 NZ_AP024766:1916998-1917100 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT39526 NZ_AP024766:c1917107-1916962 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
