Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1917738..1917883 | Replicon | chromosome |
| Accession | NZ_AP024760 | ||
| Organism | Klebsiella pneumoniae strain TUM12129 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1917774..1917876 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1917738..1917883 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J88_RS09370 (TUM12129_18080) | 1912868..1914928 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| K6J88_RS09375 (TUM12129_18090) | 1914932..1915591 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6J88_RS09380 (TUM12129_18100) | 1915670..1915900 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6J88_RS09385 (TUM12129_18110) | 1916013..1916387 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6J88_RS09390 (TUM12129_18120) | 1916391..1917260 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6J88_RS09395 (TUM12129_18130) | 1917277..1917615 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1917738..1917883 | - | 146 | - | - | Antitoxin |
| - | 1917774..1917876 | + | 103 | - | - | Toxin |
| K6J88_RS09400 | 1918251..1918394 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6J88_RS09405 (TUM12129_18140) | 1918499..1919467 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6J88_RS09410 (TUM12129_18150) | 1919624..1920277 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| K6J88_RS09415 (TUM12129_18160) | 1920274..1920465 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6J88_RS09420 (TUM12129_18170) | 1920563..1920802 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6J88_RS09425 (TUM12129_18180) | 1920918..1922351 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T39488 NZ_AP024760:1917774-1917876 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT39488 NZ_AP024760:c1917883-1917738 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
