Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1915918..1916063 | Replicon | chromosome |
| Accession | NZ_AP024753 | ||
| Organism | Klebsiella pneumoniae strain TUM12127 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1915954..1916056 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1915918..1916063 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J87_RS09360 (TUM12127_18060) | 1911048..1913108 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| K6J87_RS09365 (TUM12127_18070) | 1913112..1913771 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6J87_RS09370 (TUM12127_18080) | 1913850..1914080 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6J87_RS09375 (TUM12127_18090) | 1914193..1914567 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6J87_RS09380 (TUM12127_18100) | 1914571..1915440 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6J87_RS09385 (TUM12127_18110) | 1915457..1915795 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1915918..1916063 | - | 146 | - | - | Antitoxin |
| - | 1915954..1916056 | + | 103 | - | - | Toxin |
| K6J87_RS09390 | 1916431..1916574 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6J87_RS09395 (TUM12127_18120) | 1916679..1917647 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6J87_RS09400 (TUM12127_18130) | 1917804..1918457 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| K6J87_RS09405 (TUM12127_18140) | 1918454..1918645 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6J87_RS09410 (TUM12127_18150) | 1918743..1918982 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6J87_RS09415 (TUM12127_18160) | 1919098..1920531 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T39450 NZ_AP024753:1915954-1916056 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT39450 NZ_AP024753:c1916063-1915918 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
