Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1918386..1918531 | Replicon | chromosome |
| Accession | NZ_AP024750 | ||
| Organism | Klebsiella pneumoniae strain TUM12126 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1918422..1918524 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1918386..1918531 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J82_RS09375 (TUM12126_18080) | 1913516..1915576 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| K6J82_RS09380 (TUM12126_18090) | 1915580..1916239 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| K6J82_RS09385 (TUM12126_18100) | 1916318..1916548 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| K6J82_RS09390 (TUM12126_18110) | 1916661..1917035 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| K6J82_RS09395 (TUM12126_18120) | 1917039..1917908 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| K6J82_RS09400 (TUM12126_18130) | 1917925..1918263 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1918386..1918531 | - | 146 | - | - | Antitoxin |
| - | 1918422..1918524 | + | 103 | - | - | Toxin |
| K6J82_RS09405 | 1918899..1919042 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| K6J82_RS09410 (TUM12126_18140) | 1919147..1920115 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| K6J82_RS09415 (TUM12126_18150) | 1920272..1920925 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| K6J82_RS09420 (TUM12126_18160) | 1920922..1921113 | - | 192 | WP_002911395.1 | YebW family protein | - |
| K6J82_RS09425 (TUM12126_18170) | 1921211..1921450 | - | 240 | WP_002911393.1 | YebV family protein | - |
| K6J82_RS09430 (TUM12126_18180) | 1921566..1922999 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T39431 NZ_AP024750:1918422-1918524 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT39431 NZ_AP024750:c1918531-1918386 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
