Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2207567..2207838 | Replicon | chromosome |
| Accession | NZ_AP024687 | ||
| Organism | Escherichia coli strain FUJ80154 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2207697..2207800 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2207567..2207838 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FJMB_RS10355 | 2204122..2204784 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FJMB_RS10360 | 2204808..2205464 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FJMB_RS10365 | 2205566..2205796 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FJMB_RS10370 | 2205935..2206309 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| FJMB_RS10375 | 2206313..2207185 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| FJMB_RS10380 | 2207198..2207539 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2207567..2207838 | - | 272 | - | - | Antitoxin |
| - | 2207697..2207800 | + | 104 | - | - | Toxin |
| FJMB_RS10385 | 2207935..2208591 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| FJMB_RS10390 | 2208592..2208783 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FJMB_RS10395 | 2208888..2209124 | - | 237 | WP_001295499.1 | YebV family protein | - |
| FJMB_RS10400 | 2209242..2210681 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T39210 NZ_AP024687:2207697-2207800 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT39210 NZ_AP024687:c2207838-2207567 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
