Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2727399..2727493 Replicon chromosome
Accession NZ_AP024605
Organism Yersinia pseudotuberculosis strain 72344

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2727400..2727493 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2727399..2727493 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QUD84_RS12165 (YP72344_23190) 2722592..2724670 - 2079 WP_286225640.1 flagellar biosynthesis protein FlhA -
QUD84_RS12170 (YP72344_23200) 2724670..2725830 - 1161 WP_002211099.1 flagellar biosynthesis protein FlhB -
QUD84_RS12175 (YP72344_23210) 2726362..2726820 + 459 WP_002211098.1 hypothetical protein -
QUD84_RS12180 (YP72344_23220) 2726814..2727140 + 327 WP_002211097.1 DUF1493 family protein -
- 2727399..2727493 + 95 - - Antitoxin
- 2727400..2727493 - 94 - - Toxin
QUD84_RS12185 (YP72344_23230) 2727663..2728004 - 342 WP_002211095.1 YebY family protein -
QUD84_RS12190 (YP72344_23240) 2728101..2728985 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
QUD84_RS12195 (YP72344_23250) 2728988..2729374 - 387 WP_002211093.1 CopC domain-containing protein YobA -
QUD84_RS12200 (YP72344_23260) 2729753..2730262 - 510 WP_011192158.1 non-heme ferritin -
QUD84_RS12205 (YP72344_23270) 2730663..2730893 + 231 WP_002211091.1 DNA polymerase III subunit theta -
QUD84_RS12210 (YP72344_23280) 2730953..2731903 - 951 WP_011192157.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T38917 NZ_AP024605:c2727493-2727400 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT38917 NZ_AP024605:2727399-2727493 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References