Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4731789..4732305 Replicon chromosome
Accession NZ_AP024576
Organism Klebsiella pneumoniae strain KpWEA4-1

Toxin (Protein)


Gene name relE Uniprot ID R4YAY3
Locus tag L6441_RS22920 Protein ID WP_004178374.1
Coordinates 4731789..4732073 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID R4Y888
Locus tag L6441_RS22925 Protein ID WP_002886901.1
Coordinates 4732063..4732305 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
L6441_RS22895 (MAKP6SUB1_44180) 4727185..4727448 - 264 WP_004152271.1 PTS sugar transporter subunit IIB -
L6441_RS22900 4727578..4727751 + 174 WP_004222159.1 hypothetical protein -
L6441_RS22905 (MAKP6SUB1_44190) 4727754..4728497 + 744 WP_002886905.1 MurR/RpiR family transcriptional regulator -
L6441_RS22910 (MAKP6SUB1_44200) 4728854..4730992 + 2139 WP_032415880.1 anaerobic ribonucleoside-triphosphate reductase -
L6441_RS22915 (MAKP6SUB1_44210) 4731321..4731785 + 465 WP_004178375.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
L6441_RS22920 (MAKP6SUB1_44220) 4731789..4732073 - 285 WP_004178374.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
L6441_RS22925 (MAKP6SUB1_44230) 4732063..4732305 - 243 WP_002886901.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
L6441_RS22930 (MAKP6SUB1_44240) 4732383..4734293 - 1911 WP_009486549.1 PRD domain-containing protein -
L6441_RS22935 (MAKP6SUB1_44250) 4734316..4735470 - 1155 WP_032415878.1 lactonase family protein -
L6441_RS22940 (MAKP6SUB1_44260) 4735537..4736277 - 741 WP_004186692.1 KDGP aldolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-80)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11155.97 Da        Isoelectric Point: 10.3787

>T38838 WP_004178374.1 NZ_AP024576:c4732073-4731789 [Klebsiella pneumoniae]
MTYELEFDPRAWREWQKPGETVKKQFKNKLQQIVQNPRIESTRLSDLPDCYKIKLKASGYRLVYQVRDSVVVVYVIAIGK
REKAAVYHQANKRL

Download         Length: 285 bp

>T38838 NZ_AP024576:c4732073-4731789 [Klebsiella pneumoniae]
ATGACCTATGAACTGGAGTTTGATCCACGAGCCTGGCGCGAATGGCAGAAGCCTGGCGAGACGGTCAAAAAACAGTTTAA
AAATAAGCTCCAGCAGATTGTGCAGAATCCGCGAATTGAGTCGACCAGGCTGAGCGATTTACCGGATTGCTACAAAATCA
AGCTTAAGGCGTCAGGTTATCGGTTGGTGTATCAAGTACGAGATAGTGTGGTGGTGGTTTACGTTATTGCCATTGGCAAA
AGAGAGAAAGCGGCCGTTTATCATCAGGCGAATAAACGGCTCTAA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9045.55 Da        Isoelectric Point: 6.3340

>AT38838 WP_002886901.1 NZ_AP024576:c4732305-4732063 [Klebsiella pneumoniae]
MATLNVRLDDKLKKEAYAVLEKLDMTPTEAVRLLFQYIAENGRMPVKSMTISDGEAALLRTVRERLENPRPGVKVSLDDL

Download         Length: 243 bp

>AT38838 NZ_AP024576:c4732305-4732063 [Klebsiella pneumoniae]
ATGGCCACGCTCAATGTTCGACTGGACGATAAACTCAAAAAAGAGGCTTATGCCGTGCTGGAGAAACTCGATATGACACC
AACGGAGGCGGTACGCCTGCTGTTTCAATACATTGCTGAAAATGGCCGCATGCCGGTGAAAAGTATGACCATCAGTGATG
GCGAAGCGGCGTTATTACGCACCGTTCGCGAACGGCTGGAAAACCCACGGCCGGGGGTTAAGGTGAGTCTGGATGACCTA
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A6THG1

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GLP0

References