Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1885862..1886007 | Replicon | chromosome |
| Accession | NZ_AP024572 | ||
| Organism | Klebsiella pneumoniae strain KpWEA3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1885898..1886000 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1885862..1886007 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6447_RS09090 (MAKP5_17460) | 1880992..1883052 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| L6447_RS09095 (MAKP5_17470) | 1883056..1883715 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| L6447_RS09100 (MAKP5_17480) | 1883794..1884024 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| L6447_RS09105 (MAKP5_17490) | 1884137..1884511 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| L6447_RS09110 (MAKP5_17500) | 1884515..1885384 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| L6447_RS09115 (MAKP5_17510) | 1885401..1885739 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1885862..1886007 | - | 146 | - | - | Antitoxin |
| - | 1885898..1886000 | + | 103 | - | - | Toxin |
| L6447_RS09120 | 1886375..1886518 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| L6447_RS09125 (MAKP5_17520) | 1886623..1887591 | - | 969 | WP_162472361.1 | VirK/YbjX family protein | - |
| L6447_RS09130 (MAKP5_17530) | 1887748..1888401 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| L6447_RS09135 (MAKP5_17540) | 1888398..1888589 | - | 192 | WP_002911395.1 | YebW family protein | - |
| L6447_RS09140 (MAKP5_17550) | 1888687..1888926 | - | 240 | WP_002911393.1 | YebV family protein | - |
| L6447_RS09145 (MAKP5_17560) | 1889042..1890475 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T38808 NZ_AP024572:1885898-1886000 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT38808 NZ_AP024572:c1886007-1885862 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
