Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 200176..200447 Replicon chromosome
Accession NZ_AP024561
Organism Escherichia coli strain NIPH17_0036

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 200214..200317 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 200176..200447 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FLY99_RS01000 197333..198772 + 1440 WP_000057023.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
FLY99_RS01005 198890..199126 + 237 WP_001295499.1 YebV family protein -
FLY99_RS01010 199231..199422 + 192 WP_001296140.1 YebW family protein -
FLY99_RS01015 199423..200079 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 200176..200447 + 272 - - Antitoxin
- 200214..200317 - 104 - - Toxin
FLY99_RS01020 200475..200816 - 342 WP_000976492.1 YebY family protein -
FLY99_RS01025 200829..201701 - 873 WP_000879280.1 copper homeostasis membrane protein CopD -
FLY99_RS01030 201705..202079 - 375 WP_000204699.1 CopC domain-containing protein YobA -
FLY99_RS01035 202218..202448 + 231 WP_000916763.1 DNA polymerase III subunit theta -
FLY99_RS01040 202550..203206 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
FLY99_RS01045 203230..203892 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T38725 NZ_AP024561:c200317-200214 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT38725 NZ_AP024561:200176-200447 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References