Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3116361..3116632 | Replicon | chromosome |
| Accession | NZ_AP024560 | ||
| Organism | Escherichia coli strain NIPH17_0020 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3116491..3116594 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3116361..3116632 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLY91_RS14900 | 3112916..3113578 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FLY91_RS14905 | 3113602..3114258 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FLY91_RS14910 | 3114360..3114590 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FLY91_RS14915 | 3114729..3115103 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FLY91_RS14920 | 3115107..3115979 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FLY91_RS14925 | 3115992..3116333 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3116361..3116632 | - | 272 | - | - | Antitoxin |
| - | 3116491..3116594 | + | 104 | - | - | Toxin |
| FLY91_RS14930 | 3116729..3117385 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FLY91_RS14935 | 3117386..3117577 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FLY91_RS14940 | 3117682..3117918 | - | 237 | WP_001295499.1 | YebV family protein | - |
| FLY91_RS14945 | 3118036..3119475 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T38713 NZ_AP024560:3116491-3116594 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT38713 NZ_AP024560:c3116632-3116361 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
