Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1996264..1996535 | Replicon | chromosome |
| Accession | NZ_AP024521 | ||
| Organism | Escherichia coli strain E189 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1996302..1996405 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1996264..1996535 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDO00_RS09635 | 1993421..1994860 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LDO00_RS09640 | 1994978..1995214 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LDO00_RS09645 | 1995319..1995510 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LDO00_RS09650 | 1995511..1996167 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1996264..1996535 | + | 272 | - | - | Antitoxin |
| - | 1996302..1996405 | - | 104 | - | - | Toxin |
| LDO00_RS09655 | 1996563..1996904 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LDO00_RS09660 | 1996917..1997789 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LDO00_RS09665 | 1997793..1998167 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| LDO00_RS09670 | 1998306..1998536 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LDO00_RS09675 | 1998638..1999294 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LDO00_RS09680 | 1999318..1999980 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T38588 NZ_AP024521:c1996405-1996302 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT38588 NZ_AP024521:1996264-1996535 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
