Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1996276..1996547 | Replicon | chromosome |
| Accession | NZ_AP024518 | ||
| Organism | Escherichia coli strain E148 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1996314..1996417 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1996276..1996547 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDN98_RS09645 | 1993433..1994872 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LDN98_RS09650 | 1994990..1995226 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LDN98_RS09655 | 1995331..1995522 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LDN98_RS09660 | 1995523..1996179 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 1996276..1996547 | + | 272 | - | - | Antitoxin |
| - | 1996314..1996417 | - | 104 | - | - | Toxin |
| LDN98_RS09665 | 1996575..1996916 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LDN98_RS09670 | 1996929..1997801 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| LDN98_RS09675 | 1997805..1998179 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| LDN98_RS09680 | 1998318..1998548 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LDN98_RS09685 | 1998650..1999306 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LDN98_RS09690 | 1999330..1999992 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T38558 NZ_AP024518:c1996417-1996314 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT38558 NZ_AP024518:1996276-1996547 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
