Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 2883860..2885115 Replicon chromosome
Accession NZ_AP024503
Organism Pseudomonas protegens strain Go58

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PproGo58_RS13155 Protein ID WP_207167709.1
Coordinates 2884543..2885115 (+) Length 191 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PproGo58_RS13150 Protein ID WP_060843387.1
Coordinates 2883860..2884417 (+) Length 186 a.a.

Genomic Context

PproGo58_RS13140PproGo58_RS13150PproGo58_RS13155PproGo58_RS13160PproGo58_RS13165PproGo58_RS13175PproGo58_RS13180PproGo58_RS13125PproGo58_RS13130PproGo58_RS13135PproGo58_RS13145PproGo58_RS13170
Location: 2881150..2882346 (1197 bp)
Type: Others
Protein ID: WP_207167706.1
Location: 2883860..2884417 (558 bp)
Type: Antitoxin
Protein ID: WP_060843387.1
Location: 2884543..2885115 (573 bp)
Type: Toxin
Protein ID: WP_207167709.1
Location: 2885373..2887553 (2181 bp)
Type: Others
Protein ID: WP_207167711.1
Location: 2887762..2888220 (459 bp)
Type: Others
Protein ID: WP_207167713.1
Location: 2889063..2889326 (264 bp)
Type: Others
Protein ID: WP_102864520.1
Location: 2889323..2889517 (195 bp)
Type: Others
Protein ID: WP_207167715.1
Location: 2878952..2879233 (282 bp)
Type: Others
Protein ID: WP_207167700.1
Location: 2879342..2879962 (621 bp)
Type: Others
Protein ID: WP_207167702.1
Location: 2880203..2880790 (588 bp)
Type: Others
Protein ID: WP_207167704.1
Location: 2883329..2883670 (342 bp)
Type: Others
Protein ID: WP_102864516.1
Location: 2888412..2888840 (429 bp)
Type: Others
Protein ID: WP_125063949.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PproGo58_RS131252878952..2879233-282WP_207167700.1type II toxin-antitoxin system ParD family antitoxin-
PproGo58_RS131302879342..2879962-621WP_207167702.1LysE family transporter-
PproGo58_RS131352880203..2880790-588WP_207167704.1inclusion body family protein-
PproGo58_RS131402881150..2882346+1197WP_207167706.1PrpF protein-
PproGo58_RS131452883329..2883670-342WP_102864516.1low molecular weight protein tyrosine phosphatase family protein-
PproGo58_RS131502883860..2884417+558WP_060843387.1helix-turn-helix domain-containing proteinAntitoxin
PproGo58_RS131552884543..2885115+573WP_207167709.1HD domain-containing proteinToxin
PproGo58_RS131602885373..2887553+2181WP_207167711.1catalase/peroxidase HPI-
PproGo58_RS131652887762..2888220+459WP_207167713.1hypothetical protein-
PproGo58_RS131702888412..2888840-429WP_125063949.1hypothetical protein-
PproGo58_RS131752889063..2889326+264WP_102864520.1hypothetical protein-
PproGo58_RS131802889323..2889517+195WP_207167715.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--2878952..289653117579


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HD domain

(16-173)

Antitoxin

Cro/C1-type helix-turn-helix domain

(12-47)


Sequences

Toxin        


Download         Length: 191 a.a.        Molecular weight: 21601.14 Da        Isoelectric Point: 4.7436

>T38510 WP_207167709.1 NZ_AP024503:2884543-2885115 [Pseudomonas protegens]
MTPELLSGRLDFLREAEKLKDVLRSAHTSSGRQESTAEHSWRLCLMALLFEDQLGDLDLLRVLKLCIVHDLGEAIHGDIP
AVAQAAHPDKSQQERDDLQYLARSLDAPARQRLLELWDEYEGAASTEARTVKALDKLETLLQHTQGQNPADFDYGFNLDY
GRRYTDASPLFQALRQQIDADTRRRLDAQD

Download         Length: 573 bp

>T38510 NZ_AP024503:2884543-2885115 [Pseudomonas protegens]
ATGACCCCCGAACTTCTCAGCGGCCGTCTCGACTTTCTCCGTGAAGCGGAAAAACTCAAGGACGTGCTGCGCAGCGCCCA
CACCTCCAGCGGCCGCCAGGAAAGCACCGCCGAGCACAGCTGGCGCCTGTGCCTGATGGCGCTGCTGTTCGAAGACCAAC
TGGGGGACCTGGACCTGCTGCGGGTGCTGAAACTGTGCATCGTCCACGACCTGGGGGAAGCCATCCATGGCGACATCCCG
GCGGTGGCCCAGGCCGCCCACCCGGACAAGAGCCAACAGGAACGCGACGATCTGCAATACCTCGCCCGGTCCCTGGACGC
CCCGGCCCGCCAGCGCCTGCTGGAGCTGTGGGACGAATACGAAGGCGCCGCCAGCACCGAGGCGCGCACGGTCAAGGCCC
TGGACAAGCTGGAAACCCTGCTGCAACACACCCAGGGCCAGAACCCGGCGGATTTCGACTACGGCTTCAACCTCGATTAC
GGCCGCCGCTACACCGATGCCAGCCCGTTGTTCCAGGCCCTGCGCCAGCAGATCGATGCCGACACCCGGCGCCGCCTCGA
CGCCCAGGACTGA

Antitoxin


Download         Length: 186 a.a.        Molecular weight: 20416.37 Da        Isoelectric Point: 7.4189

>AT38510 WP_060843387.1 NZ_AP024503:2883860-2884417 [Pseudomonas protegens]
MSAALFTSPHLGLALRRWRLLHRVKQQHAAELFGVAQSSISRWENGRQAMEPAERARLEHLLAANLSAAADQALARLVND
SPRAVHLVCDLTHRLLACSPTRAAQFGVPLSELLGQSLWGFCTEEIVRKEAALDDLGWREVLAPPSLEFFSGHNDSAIVP
IAPSQCRWTRLNLSDGNAVRLVETL

Download         Length: 558 bp

>AT38510 NZ_AP024503:2883860-2884417 [Pseudomonas protegens]
ATGTCCGCAGCCCTGTTCACCTCACCCCATCTGGGCCTGGCCCTCAGGCGCTGGCGCCTGTTGCACCGGGTCAAGCAGCA
GCACGCTGCCGAGCTGTTCGGCGTGGCGCAGTCGAGCATTTCCCGCTGGGAAAACGGCCGGCAGGCCATGGAGCCGGCGG
AGCGTGCGCGCCTGGAGCACCTGCTGGCGGCCAACCTCAGCGCCGCTGCCGATCAGGCCCTGGCGCGGCTGGTGAATGAC
AGCCCGCGCGCCGTGCACCTGGTGTGCGACCTGACCCACCGCCTGCTGGCCTGTTCGCCGACCCGCGCCGCGCAGTTCGG
CGTGCCCTTGAGCGAGCTGCTGGGCCAATCGCTGTGGGGCTTTTGCACCGAGGAAATCGTGCGCAAGGAAGCCGCCCTGG
ATGACCTGGGCTGGCGCGAAGTGCTGGCGCCGCCGTCCCTGGAATTCTTCAGCGGCCACAACGATTCGGCCATCGTGCCC
ATCGCCCCCAGCCAGTGCCGCTGGACCCGCCTCAACCTGTCCGACGGCAACGCCGTGCGGCTGGTGGAAACCCTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
No matching records found

References