Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/upstrm_HI1419-dnstrm_HI1420
Location 735210..735806 Replicon chromosome
Accession NZ_AP024503
Organism Pseudomonas protegens strain Go58

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PproGo58_RS03265 Protein ID WP_207167004.1
Coordinates 735504..735806 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PproGo58_RS03260 Protein ID WP_207167003.1
Coordinates 735210..735500 (-) Length 97 a.a.

Genomic Context

PproGo58_RS03285PproGo58_RS03240PproGo58_RS03245PproGo58_RS03250PproGo58_RS03255PproGo58_RS03260PproGo58_RS03265PproGo58_RS03270PproGo58_RS03275PproGo58_RS03280
Location: 739242..740555 (1314 bp)
Type: Others
Protein ID: WP_207167006.1
Location: 731481..733613 (2133 bp)
Type: Others
Protein ID: WP_110650898.1
Location: 733703..734149 (447 bp)
Type: Others
Protein ID: WP_102862975.1
Location: 734168..734647 (480 bp)
Type: Others
Protein ID: WP_205413510.1
Location: 734712..735110 (399 bp)
Type: Others
Protein ID: WP_102881960.1
Location: 735210..735500 (291 bp)
Type: Antitoxin
Protein ID: WP_207167003.1
Location: 735504..735806 (303 bp)
Type: Toxin
Protein ID: WP_207167004.1
Location: 735980..736708 (729 bp)
Type: Others
Protein ID: WP_115581507.1
Location: 736705..737802 (1098 bp)
Type: Others
Protein ID: WP_102862980.1
Location: 737896..739110 (1215 bp)
Type: Others
Protein ID: WP_207167005.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PproGo58_RS03240731481..733613-2133WP_110650898.1TonB-dependent copper receptor-
PproGo58_RS03245733703..734149-447WP_102862975.1DUF2946 domain-containing protein-
PproGo58_RS03250734168..734647-480WP_205413510.1copper chaperone PCu(A)C-
PproGo58_RS03255734712..735110-399WP_102881960.1DUF2946 domain-containing protein-
PproGo58_RS03260735210..735500-291WP_207167003.1putative addiction module antidote proteinAntitoxin
PproGo58_RS03265735504..735806-303WP_207167004.1type II toxin-antitoxin system RelE/ParE family toxinToxin
PproGo58_RS03270735980..736708-729WP_115581507.1cobalt-precorrin-6A reductase-
PproGo58_RS03275736705..737802-1098WP_102862980.1cobalt-precorrin-5B (C(1))-methyltransferase-
PproGo58_RS03280737896..739110-1215WP_207167005.1precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE-
PproGo58_RS03285739242..740555+1314WP_207167006.1precorrin-3B synthase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(4-97)

Antitoxin

Uncharacterized protein HI1420

(6-93)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11610.37 Da        Isoelectric Point: 10.0622

>T38506 WP_207167004.1 NZ_AP024503:c735806-735504 [Pseudomonas protegens]
MYVFEQTLEFSRWLLHLKDPQGKTRVLARIRAAQLGRFGDCEPVGEGVYEMRIHCGPGYRVYFSRRGTVIYLLLIGGDKN
TQRRDIQRARQLAHDLKSEG

Download         Length: 303 bp

>T38506 NZ_AP024503:c735806-735504 [Pseudomonas protegens]
ATGTACGTCTTCGAGCAGACCCTGGAGTTCAGCCGCTGGCTCCTGCACCTGAAGGATCCGCAAGGCAAAACCCGTGTACT
GGCCAGGATCCGCGCCGCCCAACTGGGCCGATTCGGCGACTGCGAACCGGTGGGCGAAGGTGTCTATGAAATGCGCATCC
ATTGCGGCCCCGGCTATCGGGTGTACTTCTCGCGCCGGGGCACGGTGATCTACCTGTTGTTGATCGGCGGTGACAAGAAC
ACCCAGAGACGCGATATCCAACGCGCCAGGCAACTGGCCCACGACCTCAAGAGCGAGGGTTGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10423.99 Da        Isoelectric Point: 6.4594

>AT38506 WP_207167003.1 NZ_AP024503:c735500-735210 [Pseudomonas protegens]
MHTPVTRFDAAEYLKTPEDMVAYLDACFEEDAGDGKLIRAALNDIARARGMTQIARDTGLGRESLYKALGSQGNPEFATI
IKVMKALGLKLHVSPA

Download         Length: 291 bp

>AT38506 NZ_AP024503:c735500-735210 [Pseudomonas protegens]
ATGCACACCCCAGTCACCCGCTTCGACGCGGCGGAGTACCTCAAGACCCCTGAAGACATGGTGGCCTACCTCGACGCCTG
CTTCGAGGAAGATGCCGGCGACGGCAAGCTGATCCGCGCCGCCCTCAACGACATCGCCCGCGCCCGCGGCATGACCCAGA
TCGCCCGCGATACCGGCCTGGGCCGCGAGAGCCTGTACAAGGCCCTGGGCAGCCAGGGCAATCCCGAGTTCGCGACTATC
ATCAAGGTCATGAAGGCACTGGGACTCAAGCTCCACGTCAGCCCGGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References