Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/upstrm_HI1419-dnstrm_HI1420
Location 735210..735806 Replicon chromosome
Accession NZ_AP024503
Organism Pseudomonas protegens strain Go58

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PproGo58_RS03265 Protein ID WP_207167004.1
Coordinates 735504..735806 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PproGo58_RS03260 Protein ID WP_207167003.1
Coordinates 735210..735500 (-) Length 97 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PproGo58_RS03240 731481..733613 - 2133 WP_110650898.1 TonB-dependent copper receptor -
PproGo58_RS03245 733703..734149 - 447 WP_102862975.1 DUF2946 domain-containing protein -
PproGo58_RS03250 734168..734647 - 480 WP_205413510.1 copper chaperone PCu(A)C -
PproGo58_RS03255 734712..735110 - 399 WP_102881960.1 DUF2946 domain-containing protein -
PproGo58_RS03260 735210..735500 - 291 WP_207167003.1 putative addiction module antidote protein Antitoxin
PproGo58_RS03265 735504..735806 - 303 WP_207167004.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PproGo58_RS03270 735980..736708 - 729 WP_115581507.1 cobalt-precorrin-6A reductase -
PproGo58_RS03275 736705..737802 - 1098 WP_102862980.1 cobalt-precorrin-5B (C(1))-methyltransferase -
PproGo58_RS03280 737896..739110 - 1215 WP_207167005.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE -
PproGo58_RS03285 739242..740555 + 1314 WP_207167006.1 precorrin-3B synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(4-97)

Antitoxin

Uncharacterized protein HI1420

(6-93)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11610.37 Da        Isoelectric Point: 10.0622

>T38506 WP_207167004.1 NZ_AP024503:c735806-735504 [Pseudomonas protegens]
MYVFEQTLEFSRWLLHLKDPQGKTRVLARIRAAQLGRFGDCEPVGEGVYEMRIHCGPGYRVYFSRRGTVIYLLLIGGDKN
TQRRDIQRARQLAHDLKSEG

Download         Length: 303 bp

>T38506 NZ_AP024503:c735806-735504 [Pseudomonas protegens]
ATGTACGTCTTCGAGCAGACCCTGGAGTTCAGCCGCTGGCTCCTGCACCTGAAGGATCCGCAAGGCAAAACCCGTGTACT
GGCCAGGATCCGCGCCGCCCAACTGGGCCGATTCGGCGACTGCGAACCGGTGGGCGAAGGTGTCTATGAAATGCGCATCC
ATTGCGGCCCCGGCTATCGGGTGTACTTCTCGCGCCGGGGCACGGTGATCTACCTGTTGTTGATCGGCGGTGACAAGAAC
ACCCAGAGACGCGATATCCAACGCGCCAGGCAACTGGCCCACGACCTCAAGAGCGAGGGTTGA

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10423.99 Da        Isoelectric Point: 6.4594

>AT38506 WP_207167003.1 NZ_AP024503:c735500-735210 [Pseudomonas protegens]
MHTPVTRFDAAEYLKTPEDMVAYLDACFEEDAGDGKLIRAALNDIARARGMTQIARDTGLGRESLYKALGSQGNPEFATI
IKVMKALGLKLHVSPA

Download         Length: 291 bp

>AT38506 NZ_AP024503:c735500-735210 [Pseudomonas protegens]
ATGCACACCCCAGTCACCCGCTTCGACGCGGCGGAGTACCTCAAGACCCCTGAAGACATGGTGGCCTACCTCGACGCCTG
CTTCGAGGAAGATGCCGGCGACGGCAAGCTGATCCGCGCCGCCCTCAACGACATCGCCCGCGCCCGCGGCATGACCCAGA
TCGCCCGCGATACCGGCCTGGGCCGCGAGAGCCTGTACAAGGCCCTGGGCAGCCAGGGCAATCCCGAGTTCGCGACTATC
ATCAAGGTCATGAAGGCACTGGGACTCAAGCTCCACGTCAGCCCGGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References