Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 3870975..3871506 Replicon chromosome
Accession NZ_AP024488
Organism Desulfoluna limicola strain ASN36

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag L6434_RS14815 Protein ID WP_236888858.1
Coordinates 3870975..3871265 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag L6434_RS14820 Protein ID WP_236888859.1
Coordinates 3871255..3871506 (-) Length 84 a.a.

Genomic Context

L6434_RS14810L6434_RS14825L6434_RS14815L6434_RS14820
Location: 3869203..3870369 (1167 bp)
Type: Others
Protein ID: WP_236888857.1
Location: 3872294..3875506 (3213 bp)
Type: Others
Protein ID: WP_236888860.1
Location: 3870975..3871265 (291 bp)
Type: Toxin
Protein ID: WP_236888858.1
Location: 3871255..3871506 (252 bp)
Type: Antitoxin
Protein ID: WP_236888859.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
L6434_RS14810 (DSLASN_30630)3869203..3870369+1167WP_236888857.1DUF2220 family protein-
L6434_RS14815 (DSLASN_30640)3870975..3871265-291WP_236888858.1type II toxin-antitoxin system RelE/ParE family toxinToxin
L6434_RS14820 (DSLASN_30650)3871255..3871506-252WP_236888859.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
L6434_RS14825 (DSLASN_30670)3872294..3875506+3213WP_236888860.1PilZ domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-75)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11257.27 Da        Isoelectric Point: 10.3910

>T38478 WP_236888858.1 NZ_AP024488:c3871265-3870975 [Desulfoluna limicola]
MPYKLKFLPTALKEWKKLDNTISTQLKKKLEEVLQNPRIQANQLRNFENHYKIKLRASGYRLVYEVIDDEIVVLVIAIGK
REGNKIYEVAKLRSGV

Download         Length: 291 bp

>T38478 NZ_AP024488:c3871265-3870975 [Desulfoluna limicola]
ATGCCCTATAAACTTAAGTTTCTGCCGACAGCCCTCAAAGAATGGAAAAAACTCGATAACACCATCAGTACCCAGCTCAA
AAAAAAACTTGAAGAGGTTCTTCAAAACCCAAGAATCCAAGCCAACCAACTCAGAAACTTTGAGAACCACTACAAAATCA
AACTCAGAGCCTCTGGCTATCGTTTGGTTTACGAGGTAATTGACGACGAAATTGTCGTGTTGGTAATCGCCATCGGTAAA
AGAGAAGGCAATAAAATCTATGAGGTGGCGAAGCTACGGTCTGGCGTGTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9070.34 Da        Isoelectric Point: 4.5799

>AT38478 WP_236888859.1 NZ_AP024488:c3871506-3871255 [Desulfoluna limicola]
MEPIYAKFSASISELKKNPSSLIQEADGCAITILNHNKPTAYLVPAATYEALLDRIEDHELGKIVLERQSEKGSALEVSL
DAL

Download         Length: 252 bp

>AT38478 NZ_AP024488:c3871506-3871255 [Desulfoluna limicola]
ATGGAACCCATATACGCAAAATTCTCTGCAAGCATCTCGGAGCTCAAAAAAAATCCGAGTTCCCTCATCCAAGAGGCCGA
TGGGTGTGCAATCACCATCTTAAACCACAATAAACCCACGGCTTATCTGGTTCCAGCCGCTACATACGAGGCACTTCTCG
ATAGAATAGAAGACCACGAGCTGGGTAAAATTGTTCTTGAGCGGCAATCAGAGAAAGGTAGTGCCCTTGAGGTGTCATTA
GATGCCCTATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References