Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
| Location | 3086192..3086730 | Replicon | chromosome |
| Accession | NZ_AP024488 | ||
| Organism | Desulfoluna limicola strain ASN36 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | - |
| Locus tag | L6434_RS11780 | Protein ID | WP_236893093.1 |
| Coordinates | 3086192..3086488 (-) | Length | 99 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | - |
| Locus tag | L6434_RS11785 | Protein ID | WP_236893094.1 |
| Coordinates | 3086494..3086730 (-) | Length | 79 a.a. |
Genomic Context
Location: 3084676..3085953 (1278 bp)
Type: Others
Protein ID: WP_236893092.1
Type: Others
Protein ID: WP_236893092.1
Location: 3081720..3083711 (1992 bp)
Type: Others
Protein ID: WP_236893165.1
Type: Others
Protein ID: WP_236893165.1
Location: 3086192..3086488 (297 bp)
Type: Toxin
Protein ID: WP_236893093.1
Type: Toxin
Protein ID: WP_236893093.1
Location: 3086494..3086730 (237 bp)
Type: Antitoxin
Protein ID: WP_236893094.1
Type: Antitoxin
Protein ID: WP_236893094.1
Location: 3087376..3089721 (2346 bp)
Type: Others
Protein ID: WP_236893095.1
Type: Others
Protein ID: WP_236893095.1
Location: 3090520..3091407 (888 bp)
Type: Others
Protein ID: WP_236893096.1
Type: Others
Protein ID: WP_236893096.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6434_RS11770 (DSLASN_24410) | 3081720..3083711 | - | 1992 | WP_236893165.1 | ankyrin repeat domain-containing protein | - |
| L6434_RS11775 (DSLASN_24420) | 3084676..3085953 | + | 1278 | WP_236893092.1 | Hsp70 family protein | - |
| L6434_RS11780 (DSLASN_24430) | 3086192..3086488 | - | 297 | WP_236893093.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| L6434_RS11785 (DSLASN_24440) | 3086494..3086730 | - | 237 | WP_236893094.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| L6434_RS11795 (DSLASN_24450) | 3087376..3089721 | - | 2346 | WP_236893095.1 | methyl-accepting chemotaxis protein | - |
| L6434_RS11800 (DSLASN_24460) | 3090520..3091407 | - | 888 | WP_236893096.1 | heterodisulfide reductase-related iron-sulfur binding cluster | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11529.24 Da Isoelectric Point: 10.4999
>T38477 WP_236893093.1 NZ_AP024488:c3086488-3086192 [Desulfoluna limicola]
MSSFRLTAKALEDFKSMGRHTQKKWGRDQRNTYLAKLNYSFHLLADQPFSGTASDNIREGYRVYHVGRHLIFYRLAPSHI
EIIRILHEKMDAQIHLKG
MSSFRLTAKALEDFKSMGRHTQKKWGRDQRNTYLAKLNYSFHLLADQPFSGTASDNIREGYRVYHVGRHLIFYRLAPSHI
EIIRILHEKMDAQIHLKG
Download Length: 297 bp
>T38477 NZ_AP024488:c3086488-3086192 [Desulfoluna limicola]
ATGTCCTCATTTCGACTGACTGCAAAGGCCCTTGAAGATTTTAAGTCCATGGGTCGCCATACTCAGAAAAAATGGGGCCG
TGATCAACGAAATACCTACCTTGCCAAGCTTAATTATAGCTTCCACTTACTGGCTGATCAGCCATTTTCAGGGACCGCCT
CCGATAACATTCGAGAGGGCTACCGGGTCTATCATGTCGGCCGCCATTTGATATTTTACCGTTTGGCACCGTCCCACATT
GAAATTATCCGTATCCTGCATGAAAAAATGGATGCCCAAATACACCTGAAAGGGTGA
ATGTCCTCATTTCGACTGACTGCAAAGGCCCTTGAAGATTTTAAGTCCATGGGTCGCCATACTCAGAAAAAATGGGGCCG
TGATCAACGAAATACCTACCTTGCCAAGCTTAATTATAGCTTCCACTTACTGGCTGATCAGCCATTTTCAGGGACCGCCT
CCGATAACATTCGAGAGGGCTACCGGGTCTATCATGTCGGCCGCCATTTGATATTTTACCGTTTGGCACCGTCCCACATT
GAAATTATCCGTATCCTGCATGAAAAAATGGATGCCCAAATACACCTGAAAGGGTGA
Antitoxin
Download Length: 79 a.a. Molecular weight: 8870.96 Da Isoelectric Point: 4.5792
>AT38477 WP_236893094.1 NZ_AP024488:c3086730-3086494 [Desulfoluna limicola]
MQKNTSVTLGEHFEKFIAHQIKCGRYASASEVIRDGLRVLEERELKLKALQSALKEGEGSGFVEYSLERVIEDLDEED
MQKNTSVTLGEHFEKFIAHQIKCGRYASASEVIRDGLRVLEERELKLKALQSALKEGEGSGFVEYSLERVIEDLDEED
Download Length: 237 bp
>AT38477 NZ_AP024488:c3086730-3086494 [Desulfoluna limicola]
ATGCAAAAAAATACAAGTGTCACGTTGGGTGAGCATTTTGAAAAGTTTATCGCCCATCAGATTAAATGTGGTCGATACGC
ATCCGCAAGCGAAGTCATTCGGGATGGATTGCGGGTTCTTGAAGAGCGGGAATTAAAGTTGAAGGCTTTGCAGAGCGCGT
TGAAAGAGGGAGAGGGTAGTGGCTTTGTAGAGTATTCACTGGAAAGGGTGATTGAAGATCTTGATGAAGAGGATTGA
ATGCAAAAAAATACAAGTGTCACGTTGGGTGAGCATTTTGAAAAGTTTATCGCCCATCAGATTAAATGTGGTCGATACGC
ATCCGCAAGCGAAGTCATTCGGGATGGATTGCGGGTTCTTGAAGAGCGGGAATTAAAGTTGAAGGCTTTGCAGAGCGCGT
TGAAAGAGGGAGAGGGTAGTGGCTTTGTAGAGTATTCACTGGAAAGGGTGATTGAAGATCTTGATGAAGAGGATTGA