Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/VapC-VagC |
| Location | 1666908..1667536 | Replicon | chromosome |
| Accession | NZ_AP024469 | ||
| Organism | Geobacter sp. SVR | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | GSVR_RS07710 | Protein ID | WP_173197397.1 |
| Coordinates | 1666908..1667309 (-) | Length | 134 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | GSVR_RS07715 | Protein ID | WP_173197399.1 |
| Coordinates | 1667309..1667536 (-) | Length | 76 a.a. |
Genomic Context
Location: 1665557..1666924 (1368 bp)
Type: Others
Protein ID: WP_173197395.1
Type: Others
Protein ID: WP_173197395.1
Location: 1662099..1662995 (897 bp)
Type: Others
Protein ID: WP_173197389.1
Type: Others
Protein ID: WP_173197389.1
Location: 1663257..1664042 (786 bp)
Type: Others
Protein ID: WP_173197391.1
Type: Others
Protein ID: WP_173197391.1
Location: 1664042..1665337 (1296 bp)
Type: Others
Protein ID: WP_173197393.1
Type: Others
Protein ID: WP_173197393.1
Location: 1666908..1667309 (402 bp)
Type: Toxin
Protein ID: WP_173197397.1
Type: Toxin
Protein ID: WP_173197397.1
Location: 1667309..1667536 (228 bp)
Type: Antitoxin
Protein ID: WP_173197399.1
Type: Antitoxin
Protein ID: WP_173197399.1
Location: 1667650..1669137 (1488 bp)
Type: Others
Protein ID: WP_173197401.1
Type: Others
Protein ID: WP_173197401.1
Location: 1669174..1669677 (504 bp)
Type: Others
Protein ID: WP_173197403.1
Type: Others
Protein ID: WP_173197403.1
Location: 1669780..1670658 (879 bp)
Type: Others
Protein ID: WP_173197405.1
Type: Others
Protein ID: WP_173197405.1
Location: 1670689..1671639 (951 bp)
Type: Others
Protein ID: WP_173197407.1
Type: Others
Protein ID: WP_173197407.1
Location: 1671654..1671986 (333 bp)
Type: Others
Protein ID: WP_173197409.1
Type: Others
Protein ID: WP_173197409.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GSVR_RS07690 | 1662099..1662995 | - | 897 | WP_173197389.1 | rod shape-determining protein | - |
| GSVR_RS07695 | 1663257..1664042 | - | 786 | WP_173197391.1 | TIGR03915 family putative DNA repair protein | - |
| GSVR_RS07700 | 1664042..1665337 | - | 1296 | WP_173197393.1 | putative DNA modification/repair radical SAM protein | - |
| GSVR_RS07705 | 1665557..1666924 | + | 1368 | WP_173197395.1 | DUF2029 domain-containing protein | - |
| GSVR_RS07710 | 1666908..1667309 | - | 402 | WP_173197397.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| GSVR_RS07715 | 1667309..1667536 | - | 228 | WP_173197399.1 | antitoxin | Antitoxin |
| GSVR_RS07720 | 1667650..1669137 | - | 1488 | WP_173197401.1 | glycosyltransferase | - |
| GSVR_RS07725 | 1669174..1669677 | - | 504 | WP_173197403.1 | hypothetical protein | - |
| GSVR_RS07730 | 1669780..1670658 | - | 879 | WP_173197405.1 | sulfurtransferase | - |
| GSVR_RS07735 | 1670689..1671639 | - | 951 | WP_173197407.1 | arsenosugar biosynthesis radical SAM protein ArsS | - |
| GSVR_RS07740 | 1671654..1671986 | - | 333 | WP_173197409.1 | arsenosugar biosynthesis-associated peroxidase-like protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 14537.91 Da Isoelectric Point: 4.8893
>T38465 WP_173197397.1 NZ_AP024469:c1667309-1666908 [Geobacter sp. SVR]
MKLLLDTNICIYIIKQQPAAVLERFLGYQVGEIALSSITVAELRYGVAKSAHREKNAQALDEFIIPLEVVSFDEEAARVY
GEIRAALEKAGTPVGAMDMLIAAHALSLGIPLVTNNTREFGRIPALTLLNWAD
MKLLLDTNICIYIIKQQPAAVLERFLGYQVGEIALSSITVAELRYGVAKSAHREKNAQALDEFIIPLEVVSFDEEAARVY
GEIRAALEKAGTPVGAMDMLIAAHALSLGIPLVTNNTREFGRIPALTLLNWAD
Download Length: 402 bp
>T38465 NZ_AP024469:c1667309-1666908 [Geobacter sp. SVR]
ATGAAGCTGCTGCTCGACACCAATATCTGCATCTACATTATCAAGCAGCAGCCGGCTGCCGTGCTCGAACGGTTTCTGGG
GTATCAGGTCGGAGAGATCGCACTGTCCTCCATTACGGTTGCGGAGTTGCGCTACGGTGTCGCCAAAAGTGCCCACCGTG
AGAAGAACGCTCAGGCCCTGGACGAGTTCATCATTCCGCTGGAAGTCGTGTCGTTCGATGAGGAAGCAGCCCGCGTCTAT
GGCGAGATCCGGGCTGCGCTGGAAAAAGCGGGCACGCCGGTCGGCGCCATGGATATGCTGATTGCTGCCCACGCGCTGTC
CCTGGGTATTCCCCTGGTTACCAACAACACCCGCGAATTTGGGCGCATCCCTGCCCTTACCCTTCTCAACTGGGCGGACT
GA
ATGAAGCTGCTGCTCGACACCAATATCTGCATCTACATTATCAAGCAGCAGCCGGCTGCCGTGCTCGAACGGTTTCTGGG
GTATCAGGTCGGAGAGATCGCACTGTCCTCCATTACGGTTGCGGAGTTGCGCTACGGTGTCGCCAAAAGTGCCCACCGTG
AGAAGAACGCTCAGGCCCTGGACGAGTTCATCATTCCGCTGGAAGTCGTGTCGTTCGATGAGGAAGCAGCCCGCGTCTAT
GGCGAGATCCGGGCTGCGCTGGAAAAAGCGGGCACGCCGGTCGGCGCCATGGATATGCTGATTGCTGCCCACGCGCTGTC
CCTGGGTATTCCCCTGGTTACCAACAACACCCGCGAATTTGGGCGCATCCCTGCCCTTACCCTTCTCAACTGGGCGGACT
GA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8776.95 Da Isoelectric Point: 10.0134
>AT38465 WP_173197399.1 NZ_AP024469:c1667536-1667309 [Geobacter sp. SVR]
MKTAKIFQNGQSQAVRLPREFRFDDSEVFIKKSGNVVQLIPRSGSWNSLFDSLKKFSGDFMAERIQPEFDKRDEF
MKTAKIFQNGQSQAVRLPREFRFDDSEVFIKKSGNVVQLIPRSGSWNSLFDSLKKFSGDFMAERIQPEFDKRDEF
Download Length: 228 bp
>AT38465 NZ_AP024469:c1667536-1667309 [Geobacter sp. SVR]
ATGAAGACGGCGAAAATATTTCAGAACGGCCAGAGTCAGGCTGTCAGGCTTCCCAGGGAGTTCCGCTTCGACGACAGCGA
AGTGTTCATCAAAAAAAGCGGCAATGTGGTGCAGTTGATCCCCCGTAGCGGCTCCTGGAACTCCCTGTTCGACAGTCTGA
AAAAATTTTCCGGCGACTTCATGGCCGAACGCATACAACCGGAGTTCGACAAACGGGACGAGTTCTGA
ATGAAGACGGCGAAAATATTTCAGAACGGCCAGAGTCAGGCTGTCAGGCTTCCCAGGGAGTTCCGCTTCGACGACAGCGA
AGTGTTCATCAAAAAAAGCGGCAATGTGGTGCAGTTGATCCCCCGTAGCGGCTCCTGGAACTCCCTGTTCGACAGTCTGA
AAAAATTTTCCGGCGACTTCATGGCCGAACGCATACAACCGGAGTTCGACAAACGGGACGAGTTCTGA