Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2930320..2930464 Replicon chromosome
Accession NZ_AP024281
Organism Enterobacter asburiae strain Ent261

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2930326..2930429 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2930320..2930464 (+)

Genomic Context


R1N_RS14240R1N_RS14245R1N_RS14255R1N_RS14260--R1N_RS14280R1N_RS14285R1N_RS14290R1N_RS14250--R1N_RS14265R1N_RS14270R1N_RS14275
Location: 2925477..2926925 (1449 bp)
Type: Others
Protein ID: WP_197745876.1
Location: 2927032..2927271 (240 bp)
Type: Others
Protein ID: WP_008500472.1
Location: 2928117..2929058 (942 bp)
Type: Others
Protein ID: WP_033145838.1
Location: 2929232..2930128 (897 bp)
Type: Others
Protein ID: WP_033145839.1
Location: 2930320..2930464 (145 bp)
Type: Antitoxin
Protein ID: -
Location: 2932302..2932532 (231 bp)
Type: Others
Protein ID: WP_008500465.1
Location: 2932643..2933293 (651 bp)
Type: Others
Protein ID: WP_033145843.1
Location: 2933318..2933980 (663 bp)
Type: Others
Protein ID: WP_010432611.1
Location: 2927306..2927950 (645 bp)
Type: Others
Protein ID: WP_033145837.1
Location: 2930326..2930429 (104 bp)
Type: Toxin
Protein ID: -
Location: 2930568..2930906 (339 bp)
Type: Others
Protein ID: WP_033145840.1
Location: 2930923..2931792 (870 bp)
Type: Others
Protein ID: WP_033145841.1
Location: 2931794..2932165 (372 bp)
Type: Others
Protein ID: WP_033145842.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
R1N_RS14240 (R1N_28080)2925477..2926925+1449WP_197745876.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-
R1N_RS14245 (R1N_28090)2927032..2927271+240WP_008500472.1YebV family protein-
R1N_RS14250 (R1N_28100)2927306..2927950-645WP_033145837.1protein-serine/threonine phosphatase-
R1N_RS14255 (R1N_28110)2928117..2929058+942WP_033145838.1VirK/YbjX family protein-
R1N_RS14260 (R1N_28120)2929232..2930128+897WP_033145839.1benzoate transporter-
-2930320..2930464+145--Antitoxin
-2930326..2930429-104--Toxin
R1N_RS14265 (R1N_28130)2930568..2930906-339WP_033145840.1YebY family protein-
R1N_RS14270 (R1N_28140)2930923..2931792-870WP_033145841.1copper homeostasis membrane protein CopD-
R1N_RS14275 (R1N_28150)2931794..2932165-372WP_033145842.1CopC domain-containing protein YobA-
R1N_RS14280 (R1N_28160)2932302..2932532+231WP_008500465.1DNA polymerase III subunit theta-
R1N_RS14285 (R1N_28170)2932643..2933293+651WP_033145843.1carbon-nitrogen hydrolase family protein-
R1N_RS14290 (R1N_28180)2933318..2933980+663WP_010432611.1exodeoxyribonuclease X-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T38295 NZ_AP024281:c2930429-2930326 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 145 bp

>AT38295 NZ_AP024281:2930320-2930464 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References