Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 1477408..1477972 Replicon chromosome
Accession NZ_AP024264
Organism Mycobacterium intracellulare strain M026

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag JN236_RS07370 Protein ID WP_036458315.1
Coordinates 1477601..1477972 (+) Length 124 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag JN236_RS07365 Protein ID WP_036458377.1
Coordinates 1477408..1477614 (+) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JN236_RS07345 1473023..1474021 + 999 WP_008254378.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
JN236_RS07350 1474067..1475212 - 1146 WP_196233638.1 hypothetical protein -
JN236_RS07355 1475354..1476427 + 1074 WP_036458307.1 redox-regulated ATPase YchF -
JN236_RS07360 1476507..1477169 - 663 WP_036458309.1 methyltransferase domain-containing protein -
JN236_RS07365 1477408..1477614 + 207 WP_036458377.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
JN236_RS07370 1477601..1477972 + 372 WP_036458315.1 type II toxin-antitoxin system VapC family toxin Toxin
JN236_RS07375 1478030..1478581 + 552 WP_038535279.1 VOC family protein -
JN236_RS07380 1478660..1479058 + 399 WP_009953435.1 VOC family protein -
JN236_RS07385 1479158..1479541 + 384 WP_196233639.1 hypothetical protein -
JN236_RS07390 1479615..1479959 - 345 WP_036458317.1 hypothetical protein -
JN236_RS07395 1480169..1480744 + 576 WP_136245571.1 C40 family peptidase -
JN236_RS07400 1481108..1481431 + 324 WP_009953431.1 antibiotic biosynthesis monooxygenase -
JN236_RS07405 1481479..1482162 - 684 WP_036458379.1 hypothetical protein -
JN236_RS07410 1482309..1482518 + 210 WP_080687320.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-111)

Antitoxin

Bacterial antitoxin of type II TA system, VapB

(1-42)


Sequences

Toxin        


Download         Length: 124 a.a.        Molecular weight: 13905.22 Da        Isoelectric Point: 6.9118

>T38262 WP_036458315.1 NZ_AP024264:1477601-1477972 [Mycobacterium intracellulare]
VILVDTSIWIDHLHVAEHRLVGRLTNDEIGCHQMVIEELALGMIKQRDDVLRLLSHLREFPLLTHAEILHLVDRRRLWGR
GLSAIDAHLLGSVAVVDGARLWTRDKKLKAACREVGVAIVDES

Download         Length: 372 bp

>T38262 NZ_AP024264:1477601-1477972 [Mycobacterium intracellulare]
GTGATCCTCGTTGACACATCGATATGGATTGACCATCTGCACGTCGCCGAGCATCGCCTCGTCGGCCGCTTGACCAACGA
CGAAATCGGTTGCCACCAAATGGTGATCGAGGAGCTGGCACTCGGTATGATCAAGCAGCGCGACGACGTACTGAGATTGC
TGTCCCATCTGCGCGAGTTTCCGTTGTTGACGCACGCGGAAATCCTCCATCTCGTTGACCGTCGCCGCTTGTGGGGAAGG
GGATTGAGCGCAATCGACGCCCACCTTCTTGGGTCGGTTGCTGTCGTCGACGGTGCACGGCTTTGGACGAGGGACAAGAA
GTTGAAAGCGGCGTGTAGAGAAGTGGGCGTTGCGATCGTCGATGAGTCGTGA

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7220.29 Da        Isoelectric Point: 11.9169

>AT38262 WP_036458377.1 NZ_AP024264:1477408-1477614 [Mycobacterium intracellulare]
MRTTVTIDDALLAQAAELTGVAESAALLRQGLQTLIRVESARRLAALGGTDPKASAAPRRRPPTRDPR

Download         Length: 207 bp

>AT38262 NZ_AP024264:1477408-1477614 [Mycobacterium intracellulare]
ATGAGGACAACAGTGACCATCGACGATGCCTTACTGGCTCAGGCGGCGGAACTGACCGGCGTGGCGGAGAGTGCGGCGCT
TCTCCGTCAGGGATTGCAGACCCTCATTCGGGTAGAGAGCGCCCGCCGTCTCGCGGCGCTCGGCGGCACGGACCCCAAGG
CGTCGGCCGCCCCGCGGCGGAGGCCGCCGACCCGTGATCCTCGTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References