Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC-VapB |
Location | 1186903..1187467 | Replicon | chromosome |
Accession | NZ_AP024241 | ||
Organism | Mycobacterium intracellulare strain M002 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | JN194_RS05925 | Protein ID | WP_036458315.1 |
Coordinates | 1187096..1187467 (+) | Length | 124 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | JN194_RS05920 | Protein ID | WP_036458377.1 |
Coordinates | 1186903..1187109 (+) | Length | 69 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JN194_RS05900 | 1182518..1183516 | + | 999 | WP_008254378.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
JN194_RS05905 | 1183562..1184707 | - | 1146 | WP_196233638.1 | hypothetical protein | - |
JN194_RS05910 | 1184849..1185922 | + | 1074 | WP_036458307.1 | redox-regulated ATPase YchF | - |
JN194_RS05915 | 1186002..1186664 | - | 663 | WP_036458309.1 | methyltransferase domain-containing protein | - |
JN194_RS05920 | 1186903..1187109 | + | 207 | WP_036458377.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
JN194_RS05925 | 1187096..1187467 | + | 372 | WP_036458315.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
JN194_RS05930 | 1187525..1188076 | + | 552 | WP_038535279.1 | VOC family protein | - |
JN194_RS05935 | 1188155..1188553 | + | 399 | WP_009953435.1 | VOC family protein | - |
JN194_RS05940 | 1188653..1189036 | + | 384 | WP_196233639.1 | hypothetical protein | - |
JN194_RS05945 | 1189110..1189454 | - | 345 | WP_036458317.1 | hypothetical protein | - |
JN194_RS05950 | 1189664..1190239 | + | 576 | WP_136245571.1 | C40 family peptidase | - |
JN194_RS05955 | 1190603..1190926 | + | 324 | WP_009953431.1 | antibiotic biosynthesis monooxygenase | - |
JN194_RS05960 | 1190974..1191657 | - | 684 | WP_036458379.1 | hypothetical protein | - |
JN194_RS05965 | 1191804..1192013 | + | 210 | WP_080687320.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 124 a.a. Molecular weight: 13905.22 Da Isoelectric Point: 6.9118
>T38189 WP_036458315.1 NZ_AP024241:1187096-1187467 [Mycobacterium intracellulare]
VILVDTSIWIDHLHVAEHRLVGRLTNDEIGCHQMVIEELALGMIKQRDDVLRLLSHLREFPLLTHAEILHLVDRRRLWGR
GLSAIDAHLLGSVAVVDGARLWTRDKKLKAACREVGVAIVDES
VILVDTSIWIDHLHVAEHRLVGRLTNDEIGCHQMVIEELALGMIKQRDDVLRLLSHLREFPLLTHAEILHLVDRRRLWGR
GLSAIDAHLLGSVAVVDGARLWTRDKKLKAACREVGVAIVDES
Download Length: 372 bp
>T38189 NZ_AP024241:1187096-1187467 [Mycobacterium intracellulare]
GTGATCCTCGTTGACACATCGATATGGATTGACCATCTGCACGTCGCCGAGCATCGCCTCGTCGGCCGCTTGACCAACGA
CGAAATCGGTTGCCACCAAATGGTGATCGAGGAGCTGGCACTCGGTATGATCAAGCAGCGCGACGACGTACTGAGATTGC
TGTCCCATCTGCGCGAGTTTCCGTTGTTGACGCACGCGGAAATCCTCCATCTCGTTGACCGTCGCCGCTTGTGGGGAAGG
GGATTGAGCGCAATCGACGCCCACCTTCTTGGGTCGGTTGCTGTCGTCGACGGTGCACGGCTTTGGACGAGGGACAAGAA
GTTGAAAGCGGCGTGTAGAGAAGTGGGCGTTGCGATCGTCGATGAGTCGTGA
GTGATCCTCGTTGACACATCGATATGGATTGACCATCTGCACGTCGCCGAGCATCGCCTCGTCGGCCGCTTGACCAACGA
CGAAATCGGTTGCCACCAAATGGTGATCGAGGAGCTGGCACTCGGTATGATCAAGCAGCGCGACGACGTACTGAGATTGC
TGTCCCATCTGCGCGAGTTTCCGTTGTTGACGCACGCGGAAATCCTCCATCTCGTTGACCGTCGCCGCTTGTGGGGAAGG
GGATTGAGCGCAATCGACGCCCACCTTCTTGGGTCGGTTGCTGTCGTCGACGGTGCACGGCTTTGGACGAGGGACAAGAA
GTTGAAAGCGGCGTGTAGAGAAGTGGGCGTTGCGATCGTCGATGAGTCGTGA
Antitoxin
Download Length: 69 a.a. Molecular weight: 7220.29 Da Isoelectric Point: 11.9169
>AT38189 WP_036458377.1 NZ_AP024241:1186903-1187109 [Mycobacterium intracellulare]
MRTTVTIDDALLAQAAELTGVAESAALLRQGLQTLIRVESARRLAALGGTDPKASAAPRRRPPTRDPR
MRTTVTIDDALLAQAAELTGVAESAALLRQGLQTLIRVESARRLAALGGTDPKASAAPRRRPPTRDPR
Download Length: 207 bp
>AT38189 NZ_AP024241:1186903-1187109 [Mycobacterium intracellulare]
ATGAGGACAACAGTGACCATCGACGATGCCTTACTGGCTCAGGCGGCGGAACTGACCGGCGTGGCGGAGAGTGCGGCGCT
TCTCCGTCAGGGATTGCAGACCCTCATTCGGGTAGAGAGCGCCCGCCGTCTCGCGGCGCTCGGCGGCACGGACCCCAAGG
CGTCGGCCGCCCCGCGGCGGAGGCCGCCGACCCGTGATCCTCGTTGA
ATGAGGACAACAGTGACCATCGACGATGCCTTACTGGCTCAGGCGGCGGAACTGACCGGCGTGGCGGAGAGTGCGGCGCT
TCTCCGTCAGGGATTGCAGACCCTCATTCGGGTAGAGAGCGCCCGCCGTCTCGCGGCGCTCGGCGGCACGGACCCCAAGG
CGTCGGCCGCCCCGCGGCGGAGGCCGCCGACCCGTGATCCTCGTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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