Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/upstrm_HI1419-dnstrm_HI1420 |
| Location | 1982261..1982851 | Replicon | chromosome |
| Accession | NZ_AP024238 | ||
| Organism | Rhodoferax sp. MIZ03 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LDN84_RS09175 | Protein ID | WP_223911499.1 |
| Coordinates | 1982261..1982560 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | LDN84_RS09180 | Protein ID | WP_223911502.1 |
| Coordinates | 1982564..1982851 (+) | Length | 96 a.a. |
Genomic Context
Location: 1978802..1980244 (1443 bp)
Type: Others
Protein ID: WP_223911489.1
Type: Others
Protein ID: WP_223911489.1
Location: 1980866..1981498 (633 bp)
Type: Others
Protein ID: WP_223911493.1
Type: Others
Protein ID: WP_223911493.1
Location: 1981593..1981883 (291 bp)
Type: Others
Protein ID: WP_223911496.1
Type: Others
Protein ID: WP_223911496.1
Location: 1982261..1982560 (300 bp)
Type: Toxin
Protein ID: WP_223911499.1
Type: Toxin
Protein ID: WP_223911499.1
Location: 1982564..1982851 (288 bp)
Type: Antitoxin
Protein ID: WP_223911502.1
Type: Antitoxin
Protein ID: WP_223911502.1
Location: 1983907..1984836 (930 bp)
Type: Others
Protein ID: WP_223911509.1
Type: Others
Protein ID: WP_223911509.1
Location: 1987017..1987541 (525 bp)
Type: Others
Protein ID: WP_223911518.1
Type: Others
Protein ID: WP_223911518.1
Location: 1982967..1983887 (921 bp)
Type: Others
Protein ID: WP_223911506.1
Type: Others
Protein ID: WP_223911506.1
Location: 1984853..1986109 (1257 bp)
Type: Others
Protein ID: WP_223911512.1
Type: Others
Protein ID: WP_223911512.1
Location: 1986109..1986975 (867 bp)
Type: Others
Protein ID: WP_223911515.1
Type: Others
Protein ID: WP_223911515.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDN84_RS09160 (MIZ03_1942) | 1978802..1980244 | + | 1443 | WP_223911489.1 | exodeoxyribonuclease I | - |
| LDN84_RS09165 (MIZ03_1944) | 1980866..1981498 | + | 633 | WP_223911493.1 | HEPN domain-containing protein | - |
| LDN84_RS09170 (MIZ03_1945) | 1981593..1981883 | + | 291 | WP_223911496.1 | hypothetical protein | - |
| LDN84_RS09175 (MIZ03_1947) | 1982261..1982560 | + | 300 | WP_223911499.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LDN84_RS09180 (MIZ03_1948) | 1982564..1982851 | + | 288 | WP_223911502.1 | putative addiction module antidote protein | Antitoxin |
| LDN84_RS09185 (MIZ03_1949) | 1982967..1983887 | - | 921 | WP_223911506.1 | AEC family transporter | - |
| LDN84_RS09190 (MIZ03_1950) | 1983907..1984836 | + | 930 | WP_223911509.1 | site-specific tyrosine recombinase XerD | - |
| LDN84_RS09195 (MIZ03_1951) | 1984853..1986109 | - | 1257 | WP_223911512.1 | HDOD domain-containing protein | - |
| LDN84_RS09200 (MIZ03_1952) | 1986109..1986975 | - | 867 | WP_223911515.1 | ferritin-like domain-containing protein | - |
| LDN84_RS09205 (MIZ03_1953) | 1987017..1987541 | + | 525 | WP_223911518.1 | gamma carbonic anhydrase family protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11341.02 Da Isoelectric Point: 9.5963
>T38177 WP_223911499.1 NZ_AP024238:1982261-1982560 [Rhodoferax sp. MIZ03]
MITFHRSDEFDTWLAALKDKIGRARIALRIRSAEHGNFGDCEPVGEGVSEMRIHFGPGYRVYFTRRGEVLYLLLLGGDKS
SQKRDIKRAIEMARALDKE
MITFHRSDEFDTWLAALKDKIGRARIALRIRSAEHGNFGDCEPVGEGVSEMRIHFGPGYRVYFTRRGEVLYLLLLGGDKS
SQKRDIKRAIEMARALDKE
Download Length: 300 bp
>T38177 NZ_AP024238:1982261-1982560 [Rhodoferax sp. MIZ03]
ATGATCACCTTTCACCGCTCAGACGAATTTGACACTTGGCTTGCGGCATTGAAGGACAAGATAGGCCGTGCTCGTATCGC
TCTTCGCATCCGCTCTGCCGAGCATGGCAACTTCGGAGACTGTGAACCCGTCGGCGAGGGAGTTTCTGAAATGCGTATTC
ATTTCGGTCCTGGCTATCGTGTTTATTTCACCCGTCGTGGTGAGGTGCTCTATCTGCTTCTGTTGGGTGGCGACAAGTCT
TCGCAGAAGCGCGACATCAAACGCGCCATTGAGATGGCGCGGGCTTTGGACAAGGAGTGA
ATGATCACCTTTCACCGCTCAGACGAATTTGACACTTGGCTTGCGGCATTGAAGGACAAGATAGGCCGTGCTCGTATCGC
TCTTCGCATCCGCTCTGCCGAGCATGGCAACTTCGGAGACTGTGAACCCGTCGGCGAGGGAGTTTCTGAAATGCGTATTC
ATTTCGGTCCTGGCTATCGTGTTTATTTCACCCGTCGTGGTGAGGTGCTCTATCTGCTTCTGTTGGGTGGCGACAAGTCT
TCGCAGAAGCGCGACATCAAACGCGCCATTGAGATGGCGCGGGCTTTGGACAAGGAGTGA
Antitoxin
Download Length: 96 a.a. Molecular weight: 10299.72 Da Isoelectric Point: 5.0745
>AT38177 WP_223911502.1 NZ_AP024238:1982564-1982851 [Rhodoferax sp. MIZ03]
MAKFSPFDAADYLDDEETISEYITAALEDSNPDVFLTAVRDVARARGMAQLAKDAGLGRESLYKALTPGAKPRYDTMLKL
LHALGVKLSASPIHS
MAKFSPFDAADYLDDEETISEYITAALEDSNPDVFLTAVRDVARARGMAQLAKDAGLGRESLYKALTPGAKPRYDTMLKL
LHALGVKLSASPIHS
Download Length: 288 bp
>AT38177 NZ_AP024238:1982564-1982851 [Rhodoferax sp. MIZ03]
ATGGCCAAATTTTCCCCATTCGATGCAGCCGACTATCTCGACGATGAAGAAACCATCTCGGAATACATCACCGCTGCGCT
GGAAGATTCCAATCCTGATGTATTTTTAACCGCCGTGCGTGATGTGGCTCGCGCCCGTGGCATGGCACAACTCGCTAAAG
ATGCCGGTCTTGGGCGTGAAAGCCTCTACAAGGCACTTACGCCCGGCGCAAAGCCTCGCTATGACACGATGCTCAAGTTG
CTTCATGCTCTCGGCGTAAAGCTCTCCGCTTCCCCCATTCATTCATAA
ATGGCCAAATTTTCCCCATTCGATGCAGCCGACTATCTCGACGATGAAGAAACCATCTCGGAATACATCACCGCTGCGCT
GGAAGATTCCAATCCTGATGTATTTTTAACCGCCGTGCGTGATGTGGCTCGCGCCCGTGGCATGGCACAACTCGCTAAAG
ATGCCGGTCTTGGGCGTGAAAGCCTCTACAAGGCACTTACGCCCGGCGCAAAGCCTCGCTATGACACGATGCTCAAGTTG
CTTCATGCTCTCGGCGTAAAGCTCTCCGCTTCCCCCATTCATTCATAA